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BaseInfo

ncRNA ID	gra-miR482c
Species	Gossypium raimondii
Class	miRNA
Genome position	chr1:8898880-8898977 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	22
Mature sequence(if miRNA)	67 - UUCCCAAAACCUCCAAUUCCAA - 88
Stem-loop(if miRNA)	U           A     C -C U            -------------   C  U  CUGGAAAUUAU GGAAU G  G UUUUGGGAAGAA             GCA GA C  ||||||||||| ||||| |  | ||||||||||||             ||| ||  GACCUUUAGUA CCUUA C  C AAAACCCUUCUU             CGU CU G -           A     A CU C            UAAUCACCGCCUA   -  A
Stem-loop sequence	UCUGGAAAUUAUAGGAAUCGCGUUUUUGGGAAGAAGCACGAUCGAUCUGCAUCCGCCACUAAUUUCUUCCCAAAACCUCCAAUUCCAAUGAUUUCCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012625878.1	ncRNA:22   AACCUUAACCUCCAAAACCCUU   1   ***|||*||||||||||||||* targets:469   AACGAAAUGGAGGUUUUGGGAU   490 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii phospholipid-transporting ATPase 1-like (LOC105796275), transcript variant X2, mRNA	phospholipid-transporting ATPase 1-like(LOC105796275)	coding protein	psRNATarget
XM_012625877.1	ncRNA:22   AACCUUAACCUCCAAAACCCUU   1   ***|||*||||||||||||||* targets:466   AACGAAAUGGAGGUUUUGGGAU   487 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii phospholipid-transporting ATPase 1-like (LOC105796275), transcript variant X1, mRNA	phospholipid-transporting ATPase 1-like(LOC105796275)	coding protein	psRNATarget
XM_012637123.1	ncRNA:22   AACCUUAACCUCCAAAACCCUU   1   ***|||||||||||||||||** targets:2246   CAUGAAUUGGAGGUUUUGGGUU   2267 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii trichohyalin-like (LOC105804483), mRNA	trichohyalin-like(LOC105804483)	coding protein	psRNATarget
XM_012637122.1	ncRNA:22   AACCUUAACCUCCAAAACCCUU   1   ***|||||||||||||||||** targets:2544   CAUGAAUUGGAGGUUUUGGGUU   2565 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii trichohyalin (LOC105804482), mRNA	trichohyalin(LOC105804482)	coding protein	psRNATarget
XM_012605393.1	ncRNA:22   AACCUUAACCUCCAAAACCCUU   1   |||||=**|||||||||||||| targets:1083   UUGGAGAGGGAGGUUUUGGGAA   1104 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii L-type lectin-domain containing receptor kinase IX.1-like (LOC105780865), mRNA	L-type lectin-domain containing receptor kinase IX.1-like(LOC105780865)	coding protein	psRNATarget
XM_012602875.1	ncRNA:22   AACCUUAACCUCCAAAACCCUU   1   |||||=**|||||||||||||| targets:1149   UUGGAGAGGGAGGUUUUGGGAA   1170 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii L-type lectin-domain containing receptor kinase IX.1-like (LOC105779129), mRNA	L-type lectin-domain containing receptor kinase IX.1-like(LOC105779129)	coding protein	psRNATarget
XM_012602876.1	ncRNA:22   AACCUUAACCUCCAAAACCCUU   1   |||||=**|||||||||||||| targets:1178   UUGGAGAGGGAGGUUUUGGGAA   1199 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii L-type lectin-domain containing receptor kinase IX.1-like (LOC105779131), mRNA	L-type lectin-domain containing receptor kinase IX.1-like(LOC105779131)	coding protein	psRNATarget
XM_012604668.1	ncRNA:22   AACCUUAACCUCCAAAACCCUU   1   |*|||=**|||||||||||||| targets:1282   UCGGAGAGGGAGGUUUUGGGAA   1303 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii L-type lectin-domain containing receptor kinase IX.1-like (LOC105780379), mRNA	L-type lectin-domain containing receptor kinase IX.1-like(LOC105780379)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).