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BaseInfo

ncRNA ID	gra-miR8663a
Species	Gossypium raimondii
Class	miRNA
Genome position	chr1:7969947-7970174 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - UUUGAACUUGGCAACUUUUUUCAC - 34
Stem-loop(if miRNA)	CCG     ------   -             C U           A   -CU   C           C       A    ---      GGU    -AUU   A  UUAAGCUU    UUA    UGUCA      GGU UUGAACUUGGCAA U UUUUCACAUUG GAC   AAA UUUUUUUUAUC AAGUUAG CCCU   AAACUU   AAUU    CCC CA        GAAC   C    |||||      ||| ||||||||||||| | ||||||||||| |||   ||| ||||||||||| ||||||| ||||   ||||||   ||||    ||| ||        ||||    ACAGU      CCG GAUUUGAACUGUU A AAGAGUGUAAC CUG   UUU GAAAAAAAUAG UUUAAUC GGGA   UUUGGG   UUAA    GGG GU        CUUG   A ACA     UUCAAU   U             U C           C   UAC   A           A       -    ACU      AGU    GUUU   -  --UACACU    UUA
Stem-loop sequence	CCGUGUCAGGUUUGAACUUGGCAACUUUUUUCACAUUGAGACCUAAACUUUUUUUUAUCCAAGUUAGACCCUAAACUUGGUAAUUAUUCCCACAUUAAGCUUGAACUUACAAUUGUUCUCACAUUGGGGUUUGAAUUUGAGGGUUUUCAAGGGCUAAUUUAGAUAAAAAAAGAUUUCAUGUCCCAAUGUGAGAACAUUUGUCAAGUUUAGUGCCUAACUUUGACAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012592449.1	ncRNA:24   CACUUUUUUCAACGGUUCAAGUUU   1   |||==||*|*|||||||||||||| targets:2334   GUGGGAACAUUUGCCAAGUUCAAA   2357 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii pectinesterase 3-like (LOC105771047), mRNA	pectinesterase 3-like(LOC105771047)	coding protein	psRNATarget
XM_012634559.1	ncRNA:24   CACUUUUUUCAACGGUUCAAGUUU   1   *||||||*|||||||=|||||||| targets:1102   AUGAAAAUAGUUGCCGAGUUCAAA   1125 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transcription initiation factor TFIID subunit 4b-like (LOC105802737), transcript variant X3, mRNA	transcription initiation factor TFIID subunit 4b-like(LOC105802737)	coding protein	psRNATarget
XM_012634558.1	ncRNA:24   CACUUUUUUCAACGGUUCAAGUUU   1   *||||||*|||||||=|||||||| targets:1144   AUGAAAAUAGUUGCCGAGUUCAAA   1167 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transcription initiation factor TFIID subunit 4b-like (LOC105802737), transcript variant X2, mRNA	transcription initiation factor TFIID subunit 4b-like(LOC105802737)	coding protein	psRNATarget
XM_012634557.1	ncRNA:24   CACUUUUUUCAACGGUUCAAGUUU   1   *||||||*|||||||=|||||||| targets:1180   AUGAAAAUAGUUGCCGAGUUCAAA   1203 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transcription initiation factor TFIID subunit 4b-like (LOC105802737), transcript variant X1, mRNA	transcription initiation factor TFIID subunit 4b-like(LOC105802737)	coding protein	psRNATarget
XM_012581786.1	ncRNA:24   CACUUUUUUCAACGGUUCAAGUUU   1   **|=||=|||||||||||||||=| targets:219   AAGGAAGAAGUUGCCAAGUUCAGA   242 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transmembrane 9 superfamily member 2-like (LOC105763548), mRNA	transmembrane 9 superfamily member 2-like(LOC105763548)	coding protein	psRNATarget
XM_012634559.1	ncRNA:24   CACUUUUUUCAACGGUUCAAGUUU   1   ||*|=||*|*|||||||||||||= targets:981   GUUAGAACAUUUGCCAAGUUCAAG   1004 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii transcription initiation factor TFIID subunit 4b-like (LOC105802737), transcript variant X3, mRNA	transcription initiation factor TFIID subunit 4b-like(LOC105802737)	coding protein	psRNATarget
XM_012634558.1	ncRNA:24   CACUUUUUUCAACGGUUCAAGUUU   1   ||*|=||*|*|||||||||||||= targets:1023   GUUAGAACAUUUGCCAAGUUCAAG   1046 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii transcription initiation factor TFIID subunit 4b-like (LOC105802737), transcript variant X2, mRNA	transcription initiation factor TFIID subunit 4b-like(LOC105802737)	coding protein	psRNATarget
XM_012634557.1	ncRNA:24   CACUUUUUUCAACGGUUCAAGUUU   1   ||*|=||*|*|||||||||||||= targets:1059   GUUAGAACAUUUGCCAAGUUCAAG   1082 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii transcription initiation factor TFIID subunit 4b-like (LOC105802737), transcript variant X1, mRNA	transcription initiation factor TFIID subunit 4b-like(LOC105802737)	coding protein	psRNATarget
XM_012604863.1	ncRNA:24   CACUUUUUUCAACGGUUCAAGUUU   1   |*||=||*|*|||||||||||||= targets:243   GGGAGAAUACUUGCCAAGUUCAAG   266 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii uncharacterized LOC105780495 (LOC105780495), transcript variant X1, mRNA	hypothetical protein(LOC105780495)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).