ncRNA ID | gra-miR8778 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr1:7355145-7355459 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 11 - UUUCCAUAUUAGGGUUUGAACUUU - 34 |
Stem-loop(if miRNA) |
UAGCUAAUU     C    UA --  U   AACU   UUU    CCAAAUUAGUCAUUGAAUUAGGCAAUUUUUCCCAUAUUGAGACUUGAACGAGAUAAUUGUUCCCAUAUUGGAGUUUGCACUUUUUUUUGUCUAAAUUAGUUCUUGAACUUGGUAAUUGUUCC          GUUUC AUAU  G  GG UUG    UUC   UGGC                                                                                                                          C          ||||| ||||  |  || |||    |||   ||||                                                                                                                          A          CUAUU AACA  A  GU GUA    AUC   UCAA                                                                                                                          U -------AA     -    -- AU  -   ----   ---    ACUCAAAAAAAAUUAGGUUUAAUCAGAAACUUGAAUUGUUAACAAGAAACAACCCCGAUCAAAAAAAAACAGAUUCAAUUAAUUAGUACAAAGAAACUUUUAAGAUUUUAAAUCCGGGAUUG |
Stem-loop sequence | UAGCUAAUUGUUUCCAUAUUAGGGUUUGAACUUUCUUUUGGCCCAAAUUAGUCAUUGAAUUAGGCAAUUUUUCCCAUAUUGAGACUUGAACGAGAUAAUUGUUCCCAUAUUGGAGUUUGCACUUUUUUUUGUCUAAAUUAGUUCUUGAACUUGGUAAUUGUUCCCAUGUUAGGGCCUAAAUUUUAGAAUUUUCAAAGAAACAUGAUUAAUUAACUUAGACAAAAAAAAACUAGCCCCAACAAAGAACAAUUGUUAAGUUCAAAGACUAAUUUGGAUUAAAAAAAACUCAAACUCUAAUGUGUAAACAAUUAUCAA |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |