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BaseInfo

ncRNA ID gra-miR8778
Species Gossypium raimondii
Class miRNA
Genome position chr1:7355145-7355459 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - UUUCCAUAUUAGGGUUUGAACUUU - 34
Stem-loop(if miRNA) UAGCUAAUU     C    UA --  U   AACU   UUU    CCAAAUUAGUCAUUGAAUUAGGCAAUUUUUCCCAUAUUGAGACUUGAACGAGAUAAUUGUUCCCAUAUUGGAGUUUGCACUUUUUUUUGUCUAAAUUAGUUCUUGAACUUGGUAAUUGUUCC
         GUUUC AUAU  G  GG UUG    UUC   UGGC                                                                                                                          C
         ||||| ||||  |  || |||    |||   ||||                                                                                                                          A
         CUAUU AACA  A  GU GUA    AUC   UCAA                                                                                                                          U
-------AA     -    -- AU  -   ----   ---    ACUCAAAAAAAAUUAGGUUUAAUCAGAAACUUGAAUUGUUAACAAGAAACAACCCCGAUCAAAAAAAAACAGAUUCAAUUAAUUAGUACAAAGAAACUUUUAAGAUUUUAAAUCCGGGAUUG
Stem-loop sequence UAGCUAAUUGUUUCCAUAUUAGGGUUUGAACUUUCUUUUGGCCCAAAUUAGUCAUUGAAUUAGGCAAUUUUUCCCAUAUUGAGACUUGAACGAGAUAAUUGUUCCCAUAUUGGAGUUUGCACUUUUUUUUGUCUAAAUUAGUUCUUGAACUUGGUAAUUGUUCCCAUGUUAGGGCCUAAAUUUUAGAAUUUUCAAAGAAACAUGAUUAAUUAACUUAGACAAAAAAAAACUAGCCCCAACAAAGAACAAUUGUUAAGUUCAAAGACUAAUUUGGAUUAAAAAAAACUCAAACUCUAAUGUGUAAACAAUUAUCAA

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).