| ncRNA ID | gra-miR7484e |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr1:5174499-5174748 [-] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 11 - AUUUAAUGUAUAGGGACUAAU - 31 |
| Stem-loop(if miRNA) |
A U C GU U AUAUUG --- A U UU U ---U --U --AU G U AC AAAUGGGCAAAUUAGUCCCUGUACGUUAGAUCAAA AG AA U GUC UUAAUAA UUCU UUC UUU AUUGUUAAAAACUAG CCUG AUG UAGC UAG UAC UGUG A ||||||||||||||||||||||||||||||||||| || || | ||| ||||||| |||| ||| ||| ||||||||||||||| |||| ||| |||| ||| ||| |||| UUUACCUGUUUAAUCAGGGAUAUGUAAUUUAGUUU UC UU A CAG GAUUAUU AAGA AGG AAG UGACAAUUUUUGGUC GGAC UAC AUUG GUU AUG GCAC C - C A UG C --GGAA UUA C U GU - UGAC UUU GUUU A U CA |
| Stem-loop sequence | AAAAUGGGCAAAUUAGUCCCUGUACGUUAGAUCAAAUAGCAAGUUUGUCAUAUUGUUAAUAAUUCUAUUCUUUUUUAUUGUUAAAAACUAGUCCUGUAUGUUAGCAUUAGGUACUUGUGACACACCACGUGUAAUUGUUUGGUUAUUUCAUCAGUCAGGCUGGUUUUUAACAGUUGGAAUGGACAGAAAUUUUAUUAGAAGGGACCAGUUUACUCUUUGAUUUAAUGUAUAGGGACUAAUUUGUCCAUUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012625869.1 |
|
2.5 | PREDICTED: Gossypium raimondii uncharacterized LOC105796268 (LOC105796268), transcript variant X4, mRNA | uncharacterized LOC105796268(LOC105796268) | coding protein | psRNATarget | |||||||||
| XM_012617601.1 |
|
2.5 | PREDICTED: Gossypium raimondii G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (LOC105790161), transcript variant X1, mRNA | G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370(LOC105790161) | coding protein | psRNATarget | |||||||||
| XM_012617602.1 |
|
2.5 | PREDICTED: Gossypium raimondii G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (LOC105790161), transcript variant X2, mRNA | G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370(LOC105790161) | coding protein | psRNATarget | |||||||||
| XM_012624898.1 |
|
2.5 | PREDICTED: Gossypium raimondii mitochondrial chaperone BCS1-like (LOC105795322), mRNA | mitochondrial chaperone BCS1-like(LOC105795322) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |