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BaseInfo

ncRNA ID gra-miR8770
Species Gossypium raimondii
Class miRNA
Genome position chr1:3316103-3316447 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - UUGAUGGUGGUAAGAAAUGUGCAU - 34
Stem-loop(if miRNA) -       CA        U     -       G           U           UU         C   AU   A        A     U   AG A      AU     -   --CA   --           AC   A  CA       AUUUCU     C     GUUG        
 AGAUAUA  GUUGAUGG GGUAA GAAAUGU CAUAAUAAAAU AAAAUGUAUAA  AAAUUAAAA AAA  UUU GUUGAGUG UAAAU UAA  G UUUUUA  GCAAU UGA    UGU  GUUCAAAUCUC  UAU GU  UUUUAUA      CUAAU GAAUU    UCUGAUUAA
 |||||||  |||||||| ||||| ||||||| ||||||||||| |||||||||||  ||||||||| |||  ||| |||||||| ||||| |||  | ||||||  ||||| |||    |||  |||||||||||  ||| ||  |||||||      ||||| |||||    ||||||||C
 UUUAUAU  UAACUACC CUAUU UUUUAUA GUAUUAUUUUA UUUUACAUAUU  UUUAGUUUU UUU  AAA CAAUUCAC AUUUA AUU  C AAAAAU  CGUUA ACU    ACA  CAAGUUUAGAG  AUA CA  AAAAUAU      GAUUA UUUAG    AGACUAAUU
A       --        U     A       A           U           -U         A   AC   C        C     U   -A -      --     C   ACCC   UC           AA   A  -A       ---GAU     U     ----        
Stem-loop sequence AGAUAUACAGUUGAUGGUGGUAAGAAAUGUGCAUAAUAAAAUUAAAAUGUAUAAUUAAAUUAAAACAAAAUUUUAGUUGAGUGAUAAAUUUAAAGGAUUUUUAAUGCAAUUGACAUGUGUUCAAAUCUCACUAUAGUCAUUUUAUAAUUUCUCUAAUCGAAUUGUUGUCUGAUUAACUUAAUCAGAGAUUUUAUUAGUAGUAUAAAAAACAAUAAAGAGAUUUGAACCUACACCCAUCACAUUGCUAAAAACAUUAUAUUUACCACUUAACCAAACAUUUAUUUUGAUUUUUUAUACAUUUUUAUUUUAUUAUGAAUAUUUUAUUAUCUCCAUCAAUUAUAUUUA

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).