| ncRNA ID | gra-miR8727 |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr1:675120-675394 [-] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 23 |
| Mature sequence(if miRNA) | 233 - CGGACUCUCAAACAGUGGAGGUA - 255 |
| Stem-loop(if miRNA) |
UCAUCCACC CA ---A AA - A GUUUAG GAA UUUU ------- C CCGAGGAGAUUCCAACGGGUUCACGGAGUUUAGGGACUGUCU GAG GUC AUCGGACUCUCAAACAGUGGAGGUAUUGUGCCU GGUGU CU UGCUCA CC GGU G UCUUU AACU A ||| ||| ||||||||||||||||||||||||||||||||| ||||| || |||||| || ||| | ||||| |||| CUU CAG UAGUCUGGGAGUUUGUUACCUCCAUAAUACGGA CUACA GA AUGGGU UU ACA G CCGUA CCCA A -UUCAGAAA CA AUGC CC A - ----GA --- ---- UAAAUUC - AGUUUUGGGUGAUUCCGGUUAACGAUUUGUAAAGGAGCCACU |
| Stem-loop sequence | UCAUCCACCGAGCAGUCAAUCGGACUCUCAAACAGUGGAGGUAUUGUGCCUAAGGUGUCUAUGCUCAGUUUAGCCGAAGGUUUUUGUCUUUCAACUCCGAGGAGAUUCCAACGGGUUCACGGAGUUUAGGGACUGUCUAAUCACCGAGGAAAUGUUUAGCAAUUGGCCUUAGUGGGUUUUGAACCCAUGCCCUUAAAUGACAUUAGUGGGUAAGAACAUCCCAGGCAUAAUACCUCCAUUGUUUGAGGGUCUGAUCGUAGACACUUCAAAGACUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012612833.1 |
|
1.0 | PREDICTED: Gossypium raimondii pentatricopeptide repeat-containing protein At2g35030, mitochondrial (LOC105786419), mRNA | pentatricopeptide repeat-containing protein At2g35030, mitochondrial(LOC105786419) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |