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BaseInfo

ncRNA ID	gra-miR7502b
Species	Gossypium raimondii
Class	miRNA
Genome position	chr1:614813-614952 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UUGUUAAAAGUUUCAUCCAUU - 31
Stem-loop(if miRNA)	CUA        U               C    GUACUA    -C     CUUAA     AAAAUAAUCAGA    GUUAUUUU GUUAAAAGUUUCAUC AUUU      UUAA  AUUGG     CUGAU            U    |||||||| ||||||||||||||| ||||      ||||  |||||     |||||    CAGUAAAA CAAUUUUUAAAGUAG UAAA      AAUU  UAAUC     AAUAU            A AGC        -               A    AAUAAC    UU     --AAA     GCAUUUAUAUUA
Stem-loop sequence	CUAGUUAUUUUUGUUAAAAGUUUCAUCCAUUUGUACUAUUAACAUUGGCUUAACUGAUAAAAUAAUCAGAUAAUUAUAUUUACGUAUAAAAACUAAUUUUUAACAAUAAAAAUAGAUGAAAUUUUUAACAAAAUGACCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012620836.1	ncRNA:21   UUACCUACUUUGAAAAUUGUU   1   ||||||||||||||||||||* targets:2563   AAUGGAUGAAACUUUUAACAU   2583 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii tetratricopeptide repeat protein 7A-like (LOC105792319), transcript variant X2, mRNA	tetratricopeptide repeat protein 7A-like(LOC105792319)	coding protein	psRNATarget
XM_012620835.1	ncRNA:21   UUACCUACUUUGAAAAUUGUU   1   ||||||||||||||||||||* targets:2865   AAUGGAUGAAACUUUUAACAU   2885 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii tetratricopeptide repeat protein 7A-like (LOC105792319), transcript variant X1, mRNA	tetratricopeptide repeat protein 7A-like(LOC105792319)	coding protein	psRNATarget
XM_012613880.1	ncRNA:21   UUACCUACUUUGAAAAUUGUU   1   |||||||||||=||||||||= targets:1379   AAUGGAUGAAAUUUUUAACAG   1399 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transcription factor bHLH121-like (LOC105787476), mRNA	transcription factor bHLH121-like(LOC105787476)	coding protein	psRNATarget
XM_012625097.1	ncRNA:21   UUACCUACUUUGAAAAUUGUU   1   |||*|||||||=||||||||| targets:1224   AAUAGAUGAAAUUUUUAACAA   1244 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii partner of Y14 and mago-like (LOC105795464), mRNA	partner of Y14 and mago-like(LOC105795464)	coding protein	psRNATarget
XM_012619930.1	ncRNA:21   UUACCUACUUUGAAAAUUGUU   1   |=||||*|||||||||||*|| targets:918   AGUGGAGGAAACUUUUAAGAA   938 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii ATP synthase subunit delta', mitochondrial-like (LOC105791719), mRNA	ATP synthase subunit delta', mitochondrial-like(LOC105791719)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).