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BaseInfo

ncRNA ID ath-miR396b-5p
Species Arabidopsis thaliana
Class miRNA
Genome position chr5:13611798-13611932 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - UUCCACAGCUUUCUUGAACUU - 31
Stem-loop(if miRNA) G     AC                   A     UUUUUCAUUUCCAUUG   UUUUCUUAAACAAAAGUAA
 GUCAU  UUUUCCACAGCUUUCUUGA CUUUC                UUU                   G
 |||||  ||||||||||||||||||| |||||                |||                   A
 CAGUA  AAAGGGUGUCGAAAGAACU GAAGG                GAA                   A
A     CA                   C     ----------UUUUAC   UUAGAAUUUCAAAAAAAAG
Stem-loop sequence GGUCAUACUUUUCCACAGCUUUCUUGAACUUUCUUUUUCAUUUCCAUUGUUUUUUUCUUAAACAAAAGUAAGAAGAAAAAAAACUUUAAGAUUAAGCAUUUUGGAAGCUCAAGAAAGCUGUGGGAAAACAUGACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_127849.4
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1057   UCGUUCAAGAAAGCCUGUGGAA   1078

3.0 Arabidopsis thaliana growth-regulating factor 1 (GRF1), mRNA growth-regulating factor 1(GRF1) coding protein psRNATarget
NM_119936.5
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1089   UCGUUCAAGAAAGCCUGUGGAA   1110

3.0 Arabidopsis thaliana growth-regulating factor 2 (GRF2), mRNA growth-regulating factor 2(GRF2) coding protein psRNATarget
BX826329.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:901   UCGUUCAAGAAAGCCUGUGGAA   922

3.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB17ZA02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_001341645.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1029   UCGUUCAAGAAAGCAUGUGGAA   1050

3.0 Arabidopsis thaliana growth-regulating factor 8 (GRF8), mRNA growth-regulating factor 8(GRF8) coding protein psRNATarget
AK176432.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:839   UCGUUCAAGAAAGCCUGUGGAA   860

3.0 Arabidopsis thaliana mRNA for transcription activator (GRL2), complete cds, clone: RAFL24-18-E23 NA coding protein psRNATarget
AK176372.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:910   UCGUUCAAGAAAGCCUGUGGAA   931

3.0 Arabidopsis thaliana mRNA for transcription activator (GRL2), complete cds, clone: RAFL24-07-M23 NA coding protein psRNATarget
AY102634.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:768   UCGUUCAAGAAAGCCUGUGGAA   789

3.0 Arabidopsis thaliana transcription activator (GRF1) mRNA, complete cds NA coding protein psRNATarget
BX820248.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:758   UCGUUCAAGAAAGCCUGUGGAA   779

3.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH12ZD08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_124745.3
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:888   UCGUUCAAGAAAGCAUGUGGAA   909

3.0 Arabidopsis thaliana growth-regulating factor 7 (GRF7), mRNA growth-regulating factor 7(GRF7) coding protein psRNATarget
AY102635.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:863   UCGUUCAAGAAAGCCUGUGGAA   884

3.0 Arabidopsis thaliana transcription activator (GRF2) mRNA, complete cds NA coding protein psRNATarget
NM_118547.2
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:837   UCGUUCAAGAAAGCAUGUGGAA   858

3.0 Arabidopsis thaliana growth-regulating factor 8 (GRF8), partial mRNA growth-regulating factor 8(GRF8) coding protein psRNATarget
BX826708.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:708   UCGUUCAAGAAAGCCUGUGGAA   729

3.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB56ZG11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AB493726.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:789   UCGUUCAAGAAAGCCUGUGGAA   810

3.0 Arabidopsis thaliana At4g37740 mRNA for hypothetical protein, partial cds, clone: RAAt4g37740 NA coding protein psRNATarget
AB493560.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:696   UCGUUCAAGAAAGCCUGUGGAA   717

3.0 Arabidopsis thaliana At2g22840 mRNA for hypothetical protein, partial cds, clone: RAAt2g22840 NA coding protein psRNATarget
NM_001341644.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:762   UCGUUCAAGAAAGCAUGUGGAA   783

3.0 Arabidopsis thaliana growth-regulating factor 8 (GRF8), partial mRNA growth-regulating factor 8(GRF8) coding protein psRNATarget
AK176109.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:529   UCGUUCAAGAAAGCAUGUGGAA   550

3.0 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL22-89-N21 NA coding protein psRNATarget
BT010882.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:429   UCGUUCAAGAAAGCAUGUGGAA   450

3.0 Arabidopsis thaliana At5g53660 gene, complete cds NA coding protein psRNATarget
AB493791.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:429   UCGUUCAAGAAAGCAUGUGGAA   450

3.0 Arabidopsis thaliana At5g53660 mRNA for hypothetical protein, partial cds, clone: RAAt5g53660 NA coding protein psRNATarget

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:15345049
"Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets";
Wang XJ, Reyes JL, Chua NH, Gaasterland T;
Genome Biol. 5:R65(2004).
3 PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant";
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
Genome Res. 16:1276-1288(2006).
4 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
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