Search result

BaseInfo

ncRNA ID	gma-miR159a-3p
Species	Glycine max
Class	miRNA
Genome position	NA
Reference genome	NA
Source	miRBase
Length	21
Mature sequence(if miRNA)	NA - UUUGGAUUGAAGGGAGCUCUA - NA
Stem-loop(if miRNA)	AAUU        UUAUGAA            GA       UU    AUCU    ----   UG   U     G     C      UC      UU     -  UCAAUA     AAAGGGGA       GUGGAGCUCCUU  AGUCCAA  GAGG    UACU    GGG  AAU GAGCU CUUAG UAUGGA  CCACAG  CUACC CA      A     ||||||||       ||||||||||||  |||||||  ||||    ||||    |||  ||| ||||| ||||| ||||||  ||||||  ||||| ||     UUUCUUCU       CAUCUCGAGGGA  UUAGGUU  UUCC    AUGA    UCC  UUA UUCGA GGGUU AUACCU  GGUGUU  GAUGG GU      G -UCU        CUUCCCA            AG       UC    AAUU    UAUU   GU   C     G     U      UC      CU     U  UUUCGU
Stem-loop sequence	AAUUAAAGGGGAUUAUGAAGUGGAGCUCCUUGAAGUCCAAUUGAGGAUCUUACUGGGUGAAUUGAGCUGCUUAGCUAUGGAUCCCACAGUUCUACCCAUCAAUAAGUGCUUUUGUGGUAGUCUUGUGGCUUCCAUAUUUGGGGAGCUUCAUUUGCCUUUAUAGUAUUAACCUUCUUUGGAUUGAAGGGAGCUCUACACCCUUCUCUUCUUUUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003526306.3	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *|||||||||||||*|||||| targets:1261   CAGAGCUCCCUUCACUCCAAA   1281 Target Full Sequence	1.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100805804), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC100805804)	coding protein	psRNATarget
XM_006582324.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *|||||||||||||*|||||| targets:1261   CAGAGCUCCCUUCACUCCAAA   1281 Target Full Sequence	1.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100805804), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC100805804)	coding protein	psRNATarget
XM_003523865.3	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *|||||||||||||*|||||| targets:1324   CAGAGCUCCCUUCACUCCAAA   1344 Target Full Sequence	1.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100792349), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC100792349)	coding protein	psRNATarget
XM_006578333.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *|||||||||||||*|||||| targets:1324   CAGAGCUCCCUUCACUCCAAA   1344 Target Full Sequence	1.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100792349), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC100792349)	coding protein	psRNATarget
XM_006592006.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *||||||==|||||||||||| targets:2183   CAGAGCUUUCUUCAAUCCAAA   2203 Target Full Sequence	2.5	PREDICTED: Glycine max beta-galactosidase 13-like (LOC102663614), mRNA	beta-galactosidase 13-like(LOC102663614)	coding protein	psRNATarget
JB170935.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||=|||||= targets:13   AGGAGCUCCCUUCAGUCCAAG   33 Target Full Sequence	2.5	Sequence 8599 from Patent EP2559767	NA	coding protein	psRNATarget
HI410474.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||=|||||= targets:13   AGGAGCUCCCUUCAGUCCAAG   33 Target Full Sequence	2.5	Sequence 8599 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242604.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||=|||||= targets:13   AGGAGCUCCCUUCAGUCCAAG   33 Target Full Sequence	2.5	Sequence 8599 from Patent EP2985353	NA	coding protein	psRNATarget
BT098668.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||=|||||= targets:280   AGGAGCUCCCUUCAGUCCAAG   300 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-12F22 unknown mRNA	NA	coding protein	psRNATarget
XM_014778561.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *|||||*|||||||||=|||| targets:777   CAGAGCACCCUUCAAUUCAAA   797 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106799639 (LOC106799639), mRNA	uncharacterized LOC106799639(LOC106799639)	coding protein	psRNATarget
XM_003543777.3	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1082   UGGAGCUCCCUUCACUCCAAU   1102 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100800658), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC100800658)	coding protein	psRNATarget
XM_006593564.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1097   UGGAGCUCCCUUCACUCCAAU   1117 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100800658), transcript variant X4, mRNA	transcription factor GAMYB-like(LOC100800658)	coding protein	psRNATarget
XM_014765331.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1137   UGGAGCUCCCUUCACUCCAAU   1157 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100800658), transcript variant X3, mRNA	transcription factor GAMYB-like(LOC100800658)	coding protein	psRNATarget
XM_006597411.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *||||||=|||||||*||||| targets:1052   CAGAGCUUCCUUCAAACCAAA   1072 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102667982 (LOC102667982), transcript variant X2, mRNA	uncharacterized LOC102667982(LOC102667982)	coding protein	psRNATarget
XM_014767377.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *||||||=|||||||*||||| targets:1097   CAGAGCUUCCUUCAAACCAAA   1117 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102667982 (LOC102667982), transcript variant X1, mRNA	uncharacterized LOC102667982(LOC102667982)	coding protein	psRNATarget
XM_006593563.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1405   UGGAGCUCCCUUCACUCCAAU   1425 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100800658), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC100800658)	coding protein	psRNATarget
XM_006605565.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1514   UGGAGCUCCCUUCACUCCAAU   1534 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100818609), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC100818609)	coding protein	psRNATarget
XM_014767378.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1304   UGGAGCUCCCUUCACUCCAAU   1324 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100785877), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC100785877)	coding protein	psRNATarget
XM_014773037.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1612   UGGAGCUCCCUUCACUCCAAU   1632 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100818609), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC100818609)	coding protein	psRNATarget
XM_006597995.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1310   UGGAGCUCCCUUCACUCCAAU   1330 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100785877), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC100785877)	coding protein	psRNATarget
EU328398.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1365   UGGAGCUCCCUUCACUCCAAU   1385 Target Full Sequence	2.5	Glycine max GAMYB protein (GAMYB) mRNA, complete cds	NA	coding protein	psRNATarget
XM_006594289.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1363   UGGAGCUCCCUUCACUCCAAU   1383 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100810415), transcript variant X4, mRNA	transcription factor GAMYB-like(LOC100810415)	coding protein	psRNATarget
XM_006594286.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1369   UGGAGCUCCCUUCACUCCAAU   1389 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100810415), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC100810415)	coding protein	psRNATarget
KC525897.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1401   UGGAGCUCCCUUCACUCCAAU   1421 Target Full Sequence	2.5	Glycine max GAMBY1-like family protein (GAMYB1) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001317612.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1401   UGGAGCUCCCUUCACUCCAAU   1421 Target Full Sequence	2.5	Glycine max transcription factor GAMYB-like (LOC100810415), mRNA	transcription factor GAMYB-like(LOC100810415)	coding protein	psRNATarget
XM_006594287.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1423   UGGAGCUCCCUUCACUCCAAU   1443 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100810415), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC100810415)	coding protein	psRNATarget
XM_006594288.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1822   UGGAGCUCCCUUCACUCCAAU   1842 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100810415), transcript variant X3, mRNA	transcription factor GAMYB-like(LOC100810415)	coding protein	psRNATarget
XM_006597998.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1951   UGGAGCUCCCUUCACUCCAAU   1971 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100785877), transcript variant X3, mRNA	transcription factor GAMYB-like(LOC100785877)	coding protein	psRNATarget
XM_014765889.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   ||||||*||||||||*||||| targets:899   UAGAGCCCCCUUCAAACCAAA   919 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100797471 (LOC100797471), transcript variant X3, mRNA	uncharacterized LOC100797471(LOC100797471)	coding protein	psRNATarget
XM_006594677.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   ||||||*||||||||*||||| targets:1039   UAGAGCCCCCUUCAAACCAAA   1059 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100797471 (LOC100797471), transcript variant X2, mRNA	uncharacterized LOC100797471(LOC100797471)	coding protein	psRNATarget
XM_006594676.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   ||||||*||||||||*||||| targets:1079   UAGAGCCCCCUUCAAACCAAA   1099 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100797471 (LOC100797471), transcript variant X1, mRNA	uncharacterized LOC100797471(LOC100797471)	coding protein	psRNATarget
XM_006592861.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   ||||||*||||||||*||||| targets:1279   UAGAGCCCCCUUCAAACCAAA   1299 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100801534 (LOC100801534), mRNA	uncharacterized LOC100801534(LOC100801534)	coding protein	psRNATarget

Reference

1	PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008).
2	PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).