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BaseInfo

ncRNA ID	gma-miR1527
Species	Glycine max
Class	miRNA
Genome position	NA
Reference genome	NA
Source	miRBase
Length	20
Mature sequence(if miRNA)	NA - UAACUCAACCUUACAAAACC - NA
Stem-loop(if miRNA)	A      -----------------AUU   AC -- -   AUCAGAGCCAUUGAACCACAUGCUAUCAGGUUUCCGCUAUCGGGCCACCCCCCAUUUAU CUCACAAGCCGGUUUUGUAAGGUUGAGUUAG CCUCAA                    UCA  A  U GGU                                                           G ||||||||||||||||||||||||||||||| ||||||                    |||  |  | |||                                                           U GAGUGUUCGGCCAAAACAUUCCAACUCAAUC GGAGUU                    UGG  U  A GAU                                                           C                                C      GAAAUAUUUAUAUAACAGUC   -- AC G   AGGCUACACCCUGAGAAUUGUGUGGGGGAGUGCUAGUCGUGAUAAUCCAAACCAAGCAU
Stem-loop sequence	CUCACAAGCCGGUUUUGUAAGGUUGAGUUAGACCUCAAAUUUCAACAUGGUAUCAGAGCCAUUGAACCACAUGCUAUCAGGUUUCCGCUAUCGGGCCACCCCCCAUUUAUGUCUACGAACCAAACCUAAUAGUGCUGAUCGUGAGGGGGUGUGUUAAGAGUCCCACAUCGGAUAGGACAUGGUCUGACAAUAUAUUUAUAAAGUUGAGGCCUAACUCAACCUUACAAAACCGGCUUGUGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006595883.2	ncRNA:20   CCAAAACAUUCCAACUCAAU   1   ||||||||=||||||||||| targets:438   GGUUUUGUGAGGUUGAGUUA   457 Target Full Sequence	1.5	PREDICTED: Glycine max exocyst complex component SEC3A-like (LOC100812048), transcript variant X3, mRNA	exocyst complex component SEC3A-like(LOC100812048)	coding protein	psRNATarget
XM_014775065.1	ncRNA:20   CCAAAACAUUCCAACUCAAU   1   |||||||||=|||||||||| targets:2578   GGUUUUGUAGGGUUGAGUUA   2597 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X4, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget
XM_014775059.1	ncRNA:20   CCAAAACAUUCCAACUCAAU   1   |||||||||=|||||||||| targets:2431   GGUUUUGUAGGGUUGAGUUA   2450 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X1, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget
XM_014775066.1	ncRNA:20   CCAAAACAUUCCAACUCAAU   1   |||||||||=|||||||||| targets:2575   GGUUUUGUAGGGUUGAGUUA   2594 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X5, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget
XM_014775062.1	ncRNA:20   CCAAAACAUUCCAACUCAAU   1   |||||||||=|||||||||| targets:2576   GGUUUUGUAGGGUUGAGUUA   2595 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X3, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget
XM_014775060.1	ncRNA:20   CCAAAACAUUCCAACUCAAU   1   |||||||||=|||||||||| targets:2576   GGUUUUGUAGGGUUGAGUUA   2595 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X2, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget
XM_014772037.1	ncRNA:20   CCAAAACAUUCCAACUCAAU   1   |*|||||||=|||||||||| targets:164   GAUUUUGUAGGGUUGAGUUA   183 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106797507 (LOC106797507), mRNA	uncharacterized LOC106797507(LOC106797507)	coding protein	psRNATarget
XM_014764135.1	ncRNA:20   CCAAAA-CAUUCCAACUCAAU   1   ||||||-|||||||||||||* targets:2128   GGUUUUUGUAAGGUUGAGUUU   2148 Target Full Sequence	3.0	PREDICTED: Glycine max histidine-containing phosphotransfer protein 1-like (LOC102668782), transcript variant X2, mRNA	histidine-containing phosphotransfer protein 1-like(LOC102668782)	coding protein	psRNATarget

Reference

1	PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008).