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BaseInfo

ncRNA ID gma-miR5674b
Species Glycine max
Class miRNA
Genome position chr9:37506191-37506395 [+]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 175 - UAAUUGUGUUGUACAUUAUCA - 195
Stem-loop(if miRNA) C    GG  -       UUU          UCAUUU       UAGUUGCUUCUUUCAGCUUACCAACAAUGAAGCCACACAAUCAAGAAUUACAAGUGGCAAC
 ACUU  GU UGAUGAU   CAAUACGAUU      AAGAAGU                                                             A
 ||||  || |||||||   ||||||||||      |||||||                                                             U
 UGAG  UA ACUAUUA   GUUGUGUUAA      AACUGAA                                                             U
C    AU  C       CAU          -----U       AUACAUUUGUAUUUGAACAUACCAAAAAAAAGGAUUUUACCAACAGUUUCCCUAAAAACAA
Stem-loop sequence CACUUGGGUUGAUGAUUUUCAAUACGAUUUCAUUUAAGAAGUUAGUUGCUUCUUUCAGCUUACCAACAAUGAAGCCACACAAUCAAGAAUUACAAGUGGCAACAUUAACAAAAAUCCCUUUGACAACCAUUUUAGGAAAAAAAACCAUACAAGUUUAUGUUUACAUAAAGUCAAUAAUUGUGUUGUACAUUAUCACAUUAGAGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT089388.1
ncRNA:21   ACUAUUACAUGUUGUGUUAAU   1
  |||||||||||||||||||||
targets:373   UGAUAAUGUACAACACAAUUA   393

0.0 Soybean clone JCVI-FLGm-1H18 unknown mRNA NA coding protein psRNATarget
XM_014761712.1
ncRNA:21   ACUAUUACAUGUUGUGUUAAU   1
  ||=||||||||||||||||||
targets:752   UGGUAAUGUACAACACAAUUA   772

1.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like (LOC100779660), mRNA pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like(LOC100779660) coding protein psRNATarget
XM_003533264.3
ncRNA:21   ACUAUUACAUGUUGUGUUAAU   1
  ||=||||||||||||||||||
targets:759   UGGUAAUGUACAACACAAUUA   779

1.0 PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC100814966), mRNA putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC100814966) coding protein psRNATarget
XM_014761713.1
ncRNA:21   ACUAUUACAUGUUGUGUUAAU   1
  ||=*|||||||||||||||||
targets:719   UGGAAAUGUACAACACAAUUA   739

2.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g63400-like (LOC102663951), mRNA pentatricopeptide repeat-containing protein At1g63400-like(LOC102663951) coding protein psRNATarget
XM_014762233.1
ncRNA:21   ACUAUUACAUGUUGUGUUAAU   1
  ||=*|||||||||||||||||
targets:662   UGGAAAUGUACAACACAAUUA   682

2.0 PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC100783968), mRNA putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC100783968) coding protein psRNATarget
XM_006587402.2
ncRNA:21   ACUAUUACAUGUUGUGUUAAU   1
  ||=|||||||||=||||||||
targets:622   UGGUAAUGUACAGCACAAUUA   642

2.5 PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC100780732), mRNA putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC100780732) coding protein psRNATarget
XM_006587401.2
ncRNA:21   ACUAUUACAUGUUGUGUUAAU   1
  ||=|||||||||=||||||||
targets:635   UGGUAAUGUACAGCACAAUUA   655

2.5 PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC100781818), mRNA putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC100781818) coding protein psRNATarget
XM_014762227.1
ncRNA:21   ACUAUUACAUGUUGUGUUAAU   1
  ||=|||||||||=||||||||
targets:707   UGGUAAUGUACAGCACAAUUA   727

2.5 PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC106794266), mRNA putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC106794266) coding protein psRNATarget
XM_014762225.1
ncRNA:21   ACUAUUACAUGUUGUGUUAAU   1
  ||=|||||||||=||||||||
targets:686   UGGUAAUGUACAGCACAAUUA   706

2.5 PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC106794619), transcript variant X2, mRNA putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC106794619) coding protein psRNATarget
XM_014762226.1
ncRNA:21   ACUAUUACAUGUUGUGUUAAU   1
  ||=|||||||||=||||||||
targets:620   UGGUAAUGUACAGCACAAUUA   640

2.5 PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC106794619), transcript variant X3, mRNA putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC106794619) coding protein psRNATarget
XM_014762224.1
ncRNA:21   ACUAUUACAUGUUGUGUUAAU   1
  ||=|||||||||=||||||||
targets:686   UGGUAAUGUACAGCACAAUUA   706

2.5 PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC106794619), transcript variant X1, mRNA putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC106794619) coding protein psRNATarget
XM_003530008.3
ncRNA:21   ACUAUUACAUGUUGUGUUAAU   1
  ||=|||||||=||||||||||
targets:772   UGGUAAUGUAUAACACAAUUA   792

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like (LOC100820602), mRNA pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like(LOC100820602) coding protein psRNATarget
XM_014762238.1
ncRNA:21   ACUAUUACAUGUUGUGUUAAU   1
  ||=|||||||||=||||||||
targets:717   UGGUAAUGUACAGCACAAUUA   737

2.5 PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC106794624), mRNA putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC106794624) coding protein psRNATarget

Reference

1 PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs";
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC;
Genes Dev. 25:2540-2553(2011).
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