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BaseInfo

ncRNA ID	gma-miR166m
Species	Glycine max
Class	miRNA
Genome position	chr9:33908873-33909048 [+]
Reference genome	v1.0
Source	miRBase
Length	20
Mature sequence(if miRNA)	132 - CGGACCAGGCUUCAUUCCCC - 151
Stem-loop(if miRNA)	---UUUCGUUGC      GA   -  A A      UU      CU  -A     -----------  GAGG      AGAG    GAGAUGAGUGAA             AAAGGU  GGU UG G GGAAUG  GUCUGG  CG  GGUCA           UG    AGGAGG    UAUU            A             ||||||  ||| || | ||||||  ||||||  ||  |||||           ||    ||||||    ||||             UUUUCA  CCA AC C CCUUAC  CGGACC  GC  UUAGU           AC    UUCUCC    UUUA            G UCCUUAUUUUUU      AC   C  - -      UU      AG  GC     UAAAAAAAAAA  ACAA      --CA    AAGGUAACCUUU
Stem-loop sequence	UUUCGUUGCAAAGGUGAGGUUGAGAGGAAUGUUGUCUGGCUCGAGGUCAUGGAGGAGGAGGAGAGUAUUGAGAUGAGUGAAAGUUUCCAAUGGAAAUUUACCCUCUUAACACAAAAAAAAAAAUUGAUUCGCGGACCAGGCUUCAUUCCCCACACCCAACUUUUUUUUUUAUUCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014779133.1	ncRNA:20   CCCCUUACUUCGGACCAGGC   1   **|||||||||||||||||| targets:338   CUGGAAUGAAGCCUGGUCCG   357 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X4, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC100800697)	coding protein	psRNATarget
XM_014779132.1	ncRNA:20   CCCCUUACUUCGGACCAGGC   1   **|||||||||||||||||| targets:498   CUGGAAUGAAGCCUGGUCCG   517 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X3, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC100800697)	coding protein	psRNATarget
XM_014777646.1	ncRNA:20   CCCCUUACUUCGGACCAGGC   1   **|||||||||||||||||| targets:627   CUGGAAUGAAGCCUGGUCCG   646 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100775524), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC100775524)	coding protein	psRNATarget
XM_014777647.1	ncRNA:20   CCCCUUACUUCGGACCAGGC   1   **|||||||||||||||||| targets:628   CUGGAAUGAAGCCUGGUCCG   647 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100775524), transcript variant X3, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC100775524)	coding protein	psRNATarget
XM_003530064.2	ncRNA:20   CCCCUUACUUCGGACCAGGC   1   **|||||||||||||||||| targets:650   CUGGAAUGAAGCCUGGUCCG   669 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100775524), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC100775524)	coding protein	psRNATarget
XM_003531605.3	ncRNA:20   CCCCUUACUUCGGACCAGGC   1   **|||||||||||||||||| targets:788   CUGGAAUGAAGCCUGGUCCG   807 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC100800697)	coding protein	psRNATarget
XM_006585513.2	ncRNA:20   CCCCUUACUUCGGACCAGGC   1   **|||||||||||||||||| targets:791   CUGGAAUGAAGCCUGGUCCG   810 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC100800697)	coding protein	psRNATarget
XM_003530061.3	ncRNA:20   CCCCUUACUUCGGACCAGGC   1   **|||||||||||||||||| targets:904   CUGGAAUGAAGCCUGGUCCG   923 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100819365), mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC100819365)	coding protein	psRNATarget
XM_003531604.3	ncRNA:20   CCCCUUACUUCGGACCAGGC   1   **|||||||||||||||||| targets:977   CUGGAAUGAAGCCUGGUCCG   996 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15 (LOC100800165), mRNA	homeobox-leucine zipper protein ATHB-15(LOC100800165)	coding protein	psRNATarget
XM_003526448.3	ncRNA:20   CCCCUUACUUCGGACCAGGC   1   **||=||||||||||||||| targets:575   CUGGGAUGAAGCCUGGUCCG   594 Target Full Sequence	2.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100797291), mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC100797291)	coding protein	psRNATarget
XM_003524945.3	ncRNA:20   CCCCUUACUUCGGACCAGGC   1   **||=||||||||||||||| targets:590   UUGGGAUGAAGCCUGGUCCG   609 Target Full Sequence	2.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100806322), mRNA	homeobox-leucine zipper protein ATHB-14-like(LOC100806322)	coding protein	psRNATarget
XM_003522668.3	ncRNA:20   CCCCUUACUUCGGACCAGGC   1   **||=||||||||||||||| targets:919   CUGGGAUGAAGCCUGGUCCG   938 Target Full Sequence	2.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-8-like (LOC100815727), mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC100815727)	coding protein	psRNATarget
XM_003546207.3	ncRNA:20   CCCCUUACUUCGGACCAGGC   1   **||=||||||||||||||| targets:929   UUGGGAUGAAGCCUGGUCCG   948 Target Full Sequence	2.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100807428), mRNA	homeobox-leucine zipper protein ATHB-14-like(LOC100807428)	coding protein	psRNATarget
XM_003532740.3	ncRNA:20   CCCCUUACUUCGGACCAGGC   1   **||=||||||||||||||| targets:1065   UUGGGAUGAAGCCUGGUCCG   1084 Target Full Sequence	2.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100807637), mRNA	homeobox-leucine zipper protein ATHB-14-like(LOC100807637)	coding protein	psRNATarget
XM_003535030.3	ncRNA:20   CCCCUUACUUCGGACCAGGC   1   **||=||||||||||||||| targets:1180   UUGGGAUGAAGCCUGGUCCG   1199 Target Full Sequence	2.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100779499), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-14-like(LOC100779499)	coding protein	psRNATarget
XM_014761858.1	ncRNA:20   CCCCUUACUUCGGACCAGGC   1   **||=||||||||||||||| targets:1186   UUGGGAUGAAGCCUGGUCCG   1205 Target Full Sequence	2.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100779499), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-14-like(LOC100779499)	coding protein	psRNATarget
XM_003538102.3	ncRNA:20   CCCCUUACUUCGGACCAGGC   1   **||=||||||||||||||| targets:1265   CUGGGAUGAAGCCUGGUCCG   1284 Target Full Sequence	2.0	PREDICTED: Glycine max homeobox-leucine zipper protein REVOLUTA-like (LOC100804870), mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC100804870)	coding protein	psRNATarget
XM_006592195.2	ncRNA:20   CCCCUUACUUCGGACCAGGC   1   **||=||||||||||||||| targets:1291   CUGGGAUGAAGCCUGGUCCG   1310 Target Full Sequence	2.0	PREDICTED: Glycine max homeobox-leucine zipper protein REVOLUTA-like (LOC100813804), mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC100813804)	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).