ncRNA ID | gma-miR5378 |
Species | Glycine max |
Class | miRNA |
Genome position | chr9:29816467-29816705 [+] |
Reference genome | v1.0 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 199 - CAUCUGAAGGAUAGAACACAUA - 220 |
Stem-loop(if miRNA) |
                    U                A                    C                                                  GUCCGAAGU CCUAAAAUUAUUUGUAAUAU UGUGUUCUAUCCUUCA AUGACUUCCUCAAUAAUAAA UUCGGACUUUGGUAUACAAAGAAAAAACUAUAAACCAAAUUUAUGGUAAA         U |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||         A GGAUUUUAAUAAACAUUAUA ACACAAGAUAGGAAGU UACUGAAGGAGUUAUUAUUU AAGCCUGAAACCAUAUGUUUCUUUUUUGAUAUUUGGUUUAAAUACCAUUU         C                     U                C                    A                                                  GUAAUAAAC |
Stem-loop sequence | CCUAAAAUUAUUUGUAAUAUUUGUGUUCUAUCCUUCAAAUGACUUCCUCAAUAAUAAACUUCGGACUUUGGUAUACAAAGAAAAAACUAUAAACCAAAUUUAUGGUAAAGUCCGAAGUUACCAAAUAAUGUUUACCAUAAAUUUGGUUUAUAGUUUUUUCUUUGUAUACCAAAGUCCGAAAUUUAUUAUUGAGGAAGUCAUCUGAAGGAUAGAACACAUAUAUUACAAAUAAUUUUAGG |
1 | PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011). |