Search result

BaseInfo

ncRNA ID gma-miR5378
Species Glycine max
Class miRNA
Genome position chr9:29816467-29816705 [+]
Reference genome v1.0
Source miRBase
Length 22
Mature sequence(if miRNA) 199 - CAUCUGAAGGAUAGAACACAUA - 220
Stem-loop(if miRNA)                     U                A                    C                                                  GUCCGAAGU
CCUAAAAUUAUUUGUAAUAU UGUGUUCUAUCCUUCA AUGACUUCCUCAAUAAUAAA UUCGGACUUUGGUAUACAAAGAAAAAACUAUAAACCAAAUUUAUGGUAAA         U
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||         A
GGAUUUUAAUAAACAUUAUA ACACAAGAUAGGAAGU UACUGAAGGAGUUAUUAUUU AAGCCUGAAACCAUAUGUUUCUUUUUUGAUAUUUGGUUUAAAUACCAUUU         C
                    U                C                    A                                                  GUAAUAAAC
Stem-loop sequence CCUAAAAUUAUUUGUAAUAUUUGUGUUCUAUCCUUCAAAUGACUUCCUCAAUAAUAAACUUCGGACUUUGGUAUACAAAGAAAAAACUAUAAACCAAAUUUAUGGUAAAGUCCGAAGUUACCAAAUAAUGUUUACCAUAAAUUUGGUUUAUAGUUUUUUCUUUGUAUACCAAAGUCCGAAAUUUAUUAUUGAGGAAGUCAUCUGAAGGAUAGAACACAUAUAUUACAAAUAAUUUUAGG

Reference

1 PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses";
Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R;
BMC Genomics. 12:307(2011).