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BaseInfo

ncRNA ID gma-miR1508c
Species Glycine max
Class miRNA
Genome position chr9:28530177-28530266 [+]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 61 - UAGAAAGGGAAAUAGCAGUUG - 81
Stem-loop(if miRNA) ----                             -C   UUACC UG  
    CUACUCAACUGCUAUUUUCCUUUUUGAAC  UUG     U  AGC
    |||||||||||||||||||||||||||||  |||     |  ||A
    GAUGAGUUGACGAUAAAGGGAAAGAUUUG  AAC     A  UCU
UCGU                             UU   ----U GU  
Stem-loop sequence CUACUCAACUGCUAUUUUCCUUUUUGAACCUUGUUACCUUGAGCAUCUUGAUCAAUUGUUUAGAAAGGGAAAUAGCAGUUGAGUAGUGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006599409.2
ncRNA:21   GUUGACGAUAAAGGGAAAGAU   1
  |*|||||*|||||||||||||
targets:372   CUACUGCCAUUUCCCUUUCUA   392

1.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like (LOC100813712), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like(LOC100813712) coding protein psRNATarget
XM_006587773.2
ncRNA:21   GUUGACGAUAAAGGGAAAGAU   1
  |*|||||*|||||||||||||
targets:404   CCACUGCCAUUUCCCUUUCUA   424

1.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like (LOC100778420), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like(LOC100778420) coding protein psRNATarget
XM_006587774.2
ncRNA:21   GUUGACGAUAAAGGGAAAGAU   1
  |*|||||*|||||||||||||
targets:404   CCACUGCCAUUUCCCUUUCUA   424

1.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like (LOC100778420), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like(LOC100778420) coding protein psRNATarget
XM_006599424.2
ncRNA:21   GUUGACGAUAAAGGGAAAGAU   1
  |*|||||*|||||||||||||
targets:252   CCACUGCCAUUUCCCUUUCUA   272

1.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like (LOC100818504), transcript variant X6, mRNA pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like(LOC100818504) coding protein psRNATarget
XM_006599423.2
ncRNA:21   GUUGACGAUAAAGGGAAAGAU   1
  |*|||||*|||||||||||||
targets:252   CCACUGCCAUUUCCCUUUCUA   272

1.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like (LOC100818504), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like(LOC100818504) coding protein psRNATarget
XM_014769273.1
ncRNA:21   GUUGACGAUAAAGGGAAAGAU   1
  =*|||||*|||||||||||||
targets:459   UUACUGCCAUUUCCCUUUCUA   479

1.0 PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC106796589), mRNA putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC106796589) coding protein psRNATarget
XM_003548915.3
ncRNA:21   GUUGACGAUAAAGGGAAAGAU   1
  |*||||=*|||||||||||||
targets:333   CCACUGUCAUUUCCCUUUCUA   353

2.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like (LOC100807278), mRNA pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like(LOC100807278) coding protein psRNATarget
XM_014768489.1
ncRNA:21   GUUGACGAUAAAGGGAAAGAU   1
  =*||||=*|||||||||||||
targets:266   UCACUGUCAUUUCCCUUUCUA   286

2.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like (LOC100795807), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like(LOC100795807) coding protein psRNATarget
XM_014768490.1
ncRNA:21   GUUGACGAUAAAGGGAAAGAU   1
  =*||||=*|||||||||||||
targets:395   UCACUGUCAUUUCCCUUUCUA   415

2.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like (LOC100795807), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like(LOC100795807) coding protein psRNATarget
XM_006599319.2
ncRNA:21   GUUGACGAUAAAGGGAAAGAU   1
  =*||||=*|||||||||||||
targets:373   UCACUGUCAUUUCCCUUUCUA   393

2.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like (LOC102663208), mRNA pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like(LOC102663208) coding protein psRNATarget
XM_014761712.1
ncRNA:21   GUUGACGAUAAAGGGAAAGAU   1
  |*||||||=|||||||||||*
targets:383   CCACUGCUGUUUCCCUUUCUC   403

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like (LOC100779660), mRNA pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like(LOC100779660) coding protein psRNATarget
XM_014762227.1
ncRNA:21   GUUGACGAUAAAGGGAAAGAU   1
  |*||||||=|||||||||||*
targets:338   CCACUGCUGUUUCCCUUUCUC   358

2.5 PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC106794266), mRNA putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC106794266) coding protein psRNATarget
XM_003533264.3
ncRNA:21   GUUGACGAUAAAGGGAAAGAU   1
  |*||||||=|||||||||||*
targets:390   CCACUGCUGUUUCCCUUUCUC   410

2.5 PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC100814966), mRNA putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC100814966) coding protein psRNATarget
XM_014762238.1
ncRNA:21   GUUGACGAUAAAGGGAAAGAU   1
  |*||||||=|||||||||||*
targets:348   CCACUGCUGUUUCCCUUUCUC   368

2.5 PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC106794624), mRNA putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC106794624) coding protein psRNATarget
XM_014769013.1
ncRNA:21   GUUGACGAUAAAGGGAAAGAU   1
  |*|||||*|||||=|||||||
targets:429   CCACUGCCAUUUCUCUUUCUA   449

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like (LOC100789435), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like(LOC100789435) coding protein psRNATarget
XM_003549077.3
ncRNA:21   GUUGACGAUAAAGGGAAAGAU   1
  |*|||||*|||||=|||||||
targets:429   CCACUGCCAUUUCUCUUUCUA   449

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like (LOC100789435), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like(LOC100789435) coding protein psRNATarget

Reference

1 PMID:21504877
"MicroRNAs in the shoot apical meristem of soybean";
Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL;
J Exp Bot. 62:2495-2506(2011).
2 PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs";
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC;
Genes Dev. 25:2540-2553(2011).
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