Search result

BaseInfo

ncRNA ID	gma-miR5038b
Species	Glycine max
Class	miRNA
Genome position	chr9:28272488-28272562 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	3 - UGAGAAUUUGGCCUCUGUCCA - 23
Stem-loop(if miRNA)	C         UG   -       AA CUUGAGAAUUUGG CUCUGUCCA  UCU AAUUAUU  U ||||||||||||| |||||||||  ||| ||||||| GAACUCUUAAACC GAGACAGGU  AGA UUAAUAA  U              C         --   C       CC
Stem-loop sequence	CUUGAGAAUUUGGCCUCUGUCCAUGUCUAAUUAUUAAUUCCAAUAAUUCAGAUGGACAGAGCCCAAAUUCUCAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170915.1	ncRNA:21   ACCUGUCUCCGGUUUAAGAGU   1   |||||||||*||||||||||| targets:61   UGGACAGAGCCCAAAUUCUCA   81 Target Full Sequence	1.5	Sequence 8579 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242584.1	ncRNA:21   ACCUGUCUCCGGUUUAAGAGU   1   |||||||||*||||||||||| targets:61   UGGACAGAGCCCAAAUUCUCA   81 Target Full Sequence	1.5	Sequence 8579 from Patent EP2985353	NA	coding protein	psRNATarget
HI410454.1	ncRNA:21   ACCUGUCUCCGGUUUAAGAGU   1   |||||||||*||||||||||| targets:61   UGGACAGAGCCCAAAUUCUCA   81 Target Full Sequence	1.5	Sequence 8579 from Patent EP2074227	NA	coding protein	psRNATarget
XM_014766378.1	ncRNA:21   ACCUGUCUCCGGUUUAAGAGU   1   ***|||||||||||||||||* targets:1370   AUUACAGAGGCCAAAUUCUCU   1390 Target Full Sequence	2.0	PREDICTED: Glycine max transcriptional adapter ADA2a-like (LOC100779424), transcript variant X6, mRNA	transcriptional adapter ADA2a-like(LOC100779424)	coding protein	psRNATarget
XM_006593799.2	ncRNA:21   ACCUGUCUCCGGUUUAAGAGU   1   ***|||||||||||||||||* targets:1395   AUUACAGAGGCCAAAUUCUCU   1415 Target Full Sequence	2.0	PREDICTED: Glycine max transcriptional adapter ADA2a-like (LOC100779424), transcript variant X5, mRNA	transcriptional adapter ADA2a-like(LOC100779424)	coding protein	psRNATarget
XM_014766377.1	ncRNA:21   ACCUGUCUCCGGUUUAAGAGU   1   ***|||||||||||||||||* targets:1414   AUUACAGAGGCCAAAUUCUCU   1434 Target Full Sequence	2.0	PREDICTED: Glycine max transcriptional adapter ADA2a-like (LOC100779424), transcript variant X3, mRNA	transcriptional adapter ADA2a-like(LOC100779424)	coding protein	psRNATarget
XM_014766376.1	ncRNA:21   ACCUGUCUCCGGUUUAAGAGU   1   ***|||||||||||||||||* targets:1426   AUUACAGAGGCCAAAUUCUCU   1446 Target Full Sequence	2.0	PREDICTED: Glycine max transcriptional adapter ADA2a-like (LOC100779424), transcript variant X2, mRNA	transcriptional adapter ADA2a-like(LOC100779424)	coding protein	psRNATarget
XM_014766375.1	ncRNA:21   ACCUGUCUCCGGUUUAAGAGU   1   ***|||||||||||||||||* targets:1429   AUUACAGAGGCCAAAUUCUCU   1449 Target Full Sequence	2.0	PREDICTED: Glycine max transcriptional adapter ADA2a-like (LOC100779424), transcript variant X1, mRNA	transcriptional adapter ADA2a-like(LOC100779424)	coding protein	psRNATarget
XM_006593796.2	ncRNA:21   ACCUGUCUCCGGUUUAAGAGU   1   ***|||||||||||||||||* targets:1856   AUUACAGAGGCCAAAUUCUCU   1876 Target Full Sequence	2.0	PREDICTED: Glycine max transcriptional adapter ADA2a-like (LOC100779424), transcript variant X4, mRNA	transcriptional adapter ADA2a-like(LOC100779424)	coding protein	psRNATarget
XM_006587195.2	ncRNA:21   ACCUGUCUCCGGUUUAAGAGU   1   |||=||||||||=|||||||| targets:930   UGGGCAGAGGCCGAAUUCUCA   950 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102669160 (LOC102669160), mRNA	uncharacterized LOC102669160(LOC102669160)	coding protein	psRNATarget

Reference

1

PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).