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BaseInfo

ncRNA ID gma-miR1518
Species Glycine max
Class miRNA
Genome position chr9:7562374-7562511 [+]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - UGUGUUGUAAAGUGAAUAUCA - 31
Stem-loop(if miRNA) AUGUG     -    -    AAA          UC   ACAUA    AUGAGAUCAACAUUGACAGAUUUAC
     CAAAA UGUG UUGU   GUGAAUAUCA  GGC     GGUC                         A
     ||||| |||| ||||   ||||||||||  |||     ||||                         G
     GUUUU ACAC AACA   CACUUAUAGU  CCG     UGUA                         G
-UAAG     C    U    --C          --   --AUU    AAUAGCACAAGAGUGCAGUUCCGAC
Stem-loop sequence AUGUGCAAAAUGUGUUGUAAAGUGAAUAUCAUCGGCACAUAGGUCAUGAGAUCAACAUUGACAGAUUUACAGGCAGCCUUGACGUGAGAACACGAUAAAUGUUUAGCCUGAUAUUCACCACAAUCACACUUUUGGAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014778428.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:290   UGAUAUUCACUUUACAACACA   310

0.0 PREDICTED: Glycine max uncharacterized LOC106799539 (LOC106799539), mRNA uncharacterized LOC106799539(LOC106799539) coding protein psRNATarget
XM_006588083.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:290   UGAUAUUCACUUUACAACACA   310

0.0 PREDICTED: Glycine max uncharacterized LOC102662924 (LOC102662924), mRNA uncharacterized LOC102662924(LOC102662924) coding protein psRNATarget
XM_006598554.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:290   UGAUAUUCACUUUACAACACA   310

0.0 PREDICTED: Glycine max uncharacterized LOC102669519 (LOC102669519), mRNA uncharacterized LOC102669519(LOC102669519) coding protein psRNATarget
NM_001248557.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:755   UGAUAUUCACUUUACAACACA   775

0.0 Glycine max uncharacterized LOC100526884 (LOC100526884), mRNA uncharacterized LOC100526884(LOC100526884) coding protein psRNATarget
BT091686.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:755   UGAUAUUCACUUUACAACACA   775

0.0 Soybean clone JCVI-FLGm-8H5 unknown mRNA NA coding protein psRNATarget
XM_014766839.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:695   UGAUAUUCACUUUACAACACA   715

0.0 PREDICTED: Glycine max uncharacterized LOC106795906 (LOC106795906), mRNA uncharacterized LOC106795906(LOC106795906) coding protein psRNATarget
XM_014772372.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:674   UGAUAUUCACUUUACAACACA   694

0.0 PREDICTED: Glycine max uncharacterized LOC106797566 (LOC106797566), mRNA uncharacterized LOC106797566(LOC106797566) coding protein psRNATarget
XM_014771488.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:698   UGAUAUUCACUUUACAACACA   718

0.0 PREDICTED: Glycine max uncharacterized LOC106797241 (LOC106797241), mRNA uncharacterized LOC106797241(LOC106797241) coding protein psRNATarget
XM_014765024.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:698   UGAUAUUCACUUUACAACACA   718

0.0 PREDICTED: Glycine max uncharacterized LOC106795431 (LOC106795431), mRNA uncharacterized LOC106795431(LOC106795431) coding protein psRNATarget
XM_014779286.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:879   UGAUAUUCACUUUACAACACA   899

0.0 PREDICTED: Glycine max uncharacterized LOC106799791 (LOC106799791), mRNA uncharacterized LOC106799791(LOC106799791) coding protein psRNATarget
XM_014766618.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:1805   UGAUAUUCACUUUACAACACA   1825

0.0 PREDICTED: Glycine max uncharacterized LOC106795740 (LOC106795740), transcript variant X2, mRNA uncharacterized LOC106795740(LOC106795740) coding protein psRNATarget
XM_014766617.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:1824   UGAUAUUCACUUUACAACACA   1844

0.0 PREDICTED: Glycine max uncharacterized LOC106795740 (LOC106795740), transcript variant X1, mRNA uncharacterized LOC106795740(LOC106795740) coding protein psRNATarget
XM_014774049.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:1879   UGAUAUUCACUUUACAACACA   1899

0.0 PREDICTED: Glycine max uncharacterized LOC106798121 (LOC106798121), mRNA uncharacterized LOC106798121(LOC106798121) coding protein psRNATarget
XM_014768201.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:2477   UGAUAUUCACUUUACAACACA   2497

0.0 PREDICTED: Glycine max uncharacterized LOC106796321 (LOC106796321), transcript variant X2, mRNA uncharacterized LOC106796321(LOC106796321) coding protein psRNATarget
XM_014768198.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:2497   UGAUAUUCACUUUACAACACA   2517

0.0 PREDICTED: Glycine max uncharacterized LOC106796321 (LOC106796321), transcript variant X1, mRNA uncharacterized LOC106796321(LOC106796321) coding protein psRNATarget
XM_014762198.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:2539   UGAUAUUCACUUUACAACACA   2559

0.0 PREDICTED: Glycine max uncharacterized LOC106794611 (LOC106794611), mRNA uncharacterized LOC106794611(LOC106794611) coding protein psRNATarget
XM_014762093.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:2569   UGAUAUUCACUUUACAACACA   2589

0.0 PREDICTED: Glycine max uncharacterized LOC106794574 (LOC106794574), mRNA uncharacterized LOC106794574(LOC106794574) coding protein psRNATarget
XM_014774577.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:2618   UGAUAUUCACUUUACAACACA   2638

0.0 PREDICTED: Glycine max uncharacterized LOC106798386 (LOC106798386), mRNA uncharacterized LOC106798386(LOC106798386) coding protein psRNATarget
XM_014776847.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:2895   UGAUAUUCACUUUACAACACA   2915

0.0 PREDICTED: Glycine max uncharacterized LOC106798992 (LOC106798992), transcript variant X3, mRNA uncharacterized LOC106798992(LOC106798992) coding protein psRNATarget
XM_014767141.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:3144   UGAUAUUCACUUUACAACACA   3164

0.0 PREDICTED: Glycine max uncharacterized LOC106796009 (LOC106796009), mRNA uncharacterized LOC106796009(LOC106796009) coding protein psRNATarget
XM_014764207.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:3220   UGAUAUUCACUUUACAACACA   3240

0.0 PREDICTED: Glycine max uncharacterized LOC106795206 (LOC106795206), mRNA uncharacterized LOC106795206(LOC106795206) coding protein psRNATarget
XM_014762313.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:3855   UGAUAUUCACUUUACAACACA   3875

0.0 PREDICTED: Glycine max uncharacterized LOC106794650 (LOC106794650), mRNA uncharacterized LOC106794650(LOC106794650) coding protein psRNATarget
XM_014771454.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  |||||||||||||||||||||
targets:3856   UGAUAUUCACUUUACAACACA   3876

0.0 PREDICTED: Glycine max uncharacterized LOC106797229 (LOC106797229), mRNA uncharacterized LOC106797229(LOC106797229) coding protein psRNATarget
XM_014764198.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  ||*||||||||||||||||||
targets:655   UGUUAUUCACUUUACAACACA   675

1.0 PREDICTED: Glycine max uncharacterized LOC106794204 (LOC106794204), transcript variant X1, mRNA uncharacterized LOC106794204(LOC106794204) coding protein psRNATarget
XM_006573938.2
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  ||*||||||||||||||||||
targets:2455   UGCUAUUCACUUUACAACACA   2475

1.0 PREDICTED: Glycine max uncharacterized LOC102667573 (LOC102667573), mRNA uncharacterized LOC102667573(LOC102667573) coding protein psRNATarget
XM_014764168.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  ||*||||||||||||||||||
targets:2877   UGUUAUUCACUUUACAACACA   2897

1.0 PREDICTED: Glycine max uncharacterized LOC106795202 (LOC106795202), mRNA uncharacterized LOC106795202(LOC106795202) coding protein psRNATarget
XM_006579057.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  ||*||||||||||||||||=|
targets:290   UGUUAUUCACUUUACAACAUA   310

2.5 PREDICTED: Glycine max uncharacterized LOC102666784 (LOC102666784), mRNA uncharacterized LOC102666784(LOC102666784) coding protein psRNATarget
XM_006605047.1
ncRNA:21   ACUAUAAGUGAAAUGUUGUGU   1
  ||*||||||||||||||||=|
targets:290   UGUUAUUCACUUUACAACAUA   310

2.5 PREDICTED: Glycine max uncharacterized LOC102666382 (LOC102666382), mRNA uncharacterized LOC102666382(LOC102666382) coding protein psRNATarget

Reference

1 PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots";
Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
BMC Genomics. 9:160(2008).
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