Search result

BaseInfo

ncRNA ID	gma-miR169k
Species	Glycine max
Class	miRNA
Genome position	chr9:5263992-5264096 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - CAGCCAAGAAUGACUUGCCGG - 31
Stem-loop(if miRNA)	U  UU  C         UG          -    -   CAUUAGGCAUA GAG GA  UG AGCCAAGAA  ACUUGCCGGA AUGC UUG           A ||| ||  || |||||||||  |||||||||| |||| |||           U CUU UU  AC UCGGUUUUU  UGAACGGCCU AUAU UCA           A    U  UC  A         GU          A    U   UAUGUUGAUAU
Stem-loop sequence	GAGUGAUUUGCAGCCAAGAAUGACUUGCCGGAAUGCUUGCAUUAGGCAUAAUAUAUAGUUGUAUACUUUAUAAUCCGGCAAGUUGUUUUUGGCUACACUUUUUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014767062.1	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||| targets:1367   GCGGCAAAUCAUUCUUGGCUG   1387 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-9 (LOC100815617), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-9(LOC100815617)	coding protein	psRNATarget
XM_006575664.2	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||| targets:1349   GCGGCAAAUCAUUCUUGGCUG   1369 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-9-like (LOC102664020), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-9-like(LOC102664020)	coding protein	psRNATarget
AK244862.1	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||| targets:1438   GCGGCAAAUCAUUCUUGGCUG   1458 Target Full Sequence	1.0	Glycine max cDNA, clone: GMFL01-15-I08	NA	coding protein	psRNATarget
XM_006575660.2	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||| targets:1406   GCGGCAAAUCAUUCUUGGCUG   1426 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-9-like (LOC102664020), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-9-like(LOC102664020)	coding protein	psRNATarget
XM_006575663.2	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||| targets:1409   GCGGCAAAUCAUUCUUGGCUG   1429 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-9-like (LOC102664020), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-9-like(LOC102664020)	coding protein	psRNATarget
XM_003544477.3	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||| targets:1530   GCGGCAAAUCAUUCUUGGCUG   1550 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-9 (LOC100815617), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-9(LOC100815617)	coding protein	psRNATarget
XM_006575661.2	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||| targets:1490   GCGGCAAAUCAUUCUUGGCUG   1510 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-9-like (LOC102664020), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-9-like(LOC102664020)	coding protein	psRNATarget
XM_003532156.3	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||* targets:1282   GCGGCAAAUCAUUCUUGGCUU   1302 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-1-like (LOC100783581), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-1-like(LOC100783581)	coding protein	psRNATarget
XM_006586118.2	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||* targets:1289   GCGGCAAAUCAUUCUUGGCUU   1309 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-1-like (LOC100783581), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-1-like(LOC100783581)	coding protein	psRNATarget
XM_003551307.3	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||* targets:1355   GCGGCAAAUCAUUCUUGGCUU   1375 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-1-like (LOC100808378), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-1-like(LOC100808378)	coding protein	psRNATarget
XM_014771032.1	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||* targets:1457   GCGGCAAAUCAUUCUUGGCUU   1477 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-1-like (LOC100808378), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-1-like(LOC100808378)	coding protein	psRNATarget
NM_001255884.2	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   **|||||*||||||||||||* targets:1144   AAGGCAAUUCAUUCUUGGCUU   1164 Target Full Sequence	2.0	Glycine max nuclear transcription factor Y subunit A-9-like (LOC100789738), mRNA	nuclear transcription factor Y subunit A-9-like(LOC100789738)	coding protein	psRNATarget
BT097664.1	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   **|||||*||||||||||||* targets:1146   AAGGCAAUUCAUUCUUGGCUU   1166 Target Full Sequence	2.0	Soybean clone JCVI-FLGm-22I24 unknown mRNA	NA	coding protein	psRNATarget
XM_003540477.3	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   **|||||*||||||||||||* targets:1163   AAGGCAAUUCAUUCUUGGCUU   1183 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-1 (LOC100782085), mRNA	nuclear transcription factor Y subunit A-1(LOC100782085)	coding protein	psRNATarget
XM_003520930.3	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *=|*=||*||||||||||||| targets:488   AUGAUAACUCAUUCUUGGCUG   508 Target Full Sequence	3.0	PREDICTED: Glycine max agamous-like MADS-box protein AGL80 (LOC100787546), mRNA	agamous-like MADS-box protein AGL80(LOC100787546)	coding protein	psRNATarget

Reference

1

PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).