ncRNA ID | gma-miR5780d |
Species | Glycine max |
Class | miRNA |
Genome position | chr9:5063268-5063506 [+] |
Reference genome | v1.0 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 6 - UGUUUUGAGUUUCUGAUAAAUU - 27 |
Stem-loop(if miRNA) |
-                                AUUAUUCC      C             G               C A      A               -A   C UC    AUAU  AUUUUUGUUUUGAGUUUCUGAUAAAUUUUUCC        GAGUUC UGAUAUAUUAAAA UUUUGUUUUGGGUCU U UCGUCA UUAAGUGAUGAUGUG  GCU U  CAAC    A  ||||||||||||||||||||||||||||||||        |||||| ||||||||||||| ||||||||||||||| | |||||| |||||||||||||||  ||| |  ||||    U  UAAAAACAAAACUCAAAGACUAUUUAAAAAGG        CUUAAG ACUAUAUAAUUUU AAAAUAAAAUUCAGA A AGCAGU AAUUCACUACUACAC  UGG A  GUUG    C C                                CAACAACA      A             A               A C      C               CA   U GA    CUGA |
Stem-loop sequence | AUUUUUGUUUUGAGUUUCUGAUAAAUUUUUCCAUUAUUCCGAGUUCCUGAUAUAUUAAAAGUUUUGUUUUGGGUCUCUAUCGUCAAUUAAGUGAUGAUGUGAGCUCUUCCAACAUAUAUCAGUCGUUGAGAUGGUACCACAUCAUCACUUAACUGACGACAAAGACUUAAAAUAAAAAUUUUAAUAUAUCAAGAAUUCACAACAACGGAAAAAUUUAUCAGAAACUCAAAACAAAAAUC |
1 | PMID:24475082
"Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons"; Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ; PLoS One. 9:e86153(2014). |