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BaseInfo

ncRNA ID gma-miR5780d
Species Glycine max
Class miRNA
Genome position chr9:5063268-5063506 [+]
Reference genome v1.0
Source miRBase
Length 22
Mature sequence(if miRNA) 6 - UGUUUUGAGUUUCUGAUAAAUU - 27
Stem-loop(if miRNA) -                                AUUAUUCC      C             G               C A      A               -A   C UC    AUAU
 AUUUUUGUUUUGAGUUUCUGAUAAAUUUUUCC        GAGUUC UGAUAUAUUAAAA UUUUGUUUUGGGUCU U UCGUCA UUAAGUGAUGAUGUG  GCU U  CAAC    A
 ||||||||||||||||||||||||||||||||        |||||| ||||||||||||| ||||||||||||||| | |||||| |||||||||||||||  ||| |  ||||    U
 UAAAAACAAAACUCAAAGACUAUUUAAAAAGG        CUUAAG ACUAUAUAAUUUU AAAAUAAAAUUCAGA A AGCAGU AAUUCACUACUACAC  UGG A  GUUG    C
C                                CAACAACA      A             A               A C      C               CA   U GA    CUGA
Stem-loop sequence AUUUUUGUUUUGAGUUUCUGAUAAAUUUUUCCAUUAUUCCGAGUUCCUGAUAUAUUAAAAGUUUUGUUUUGGGUCUCUAUCGUCAAUUAAGUGAUGAUGUGAGCUCUUCCAACAUAUAUCAGUCGUUGAGAUGGUACCACAUCAUCACUUAACUGACGACAAAGACUUAAAAUAAAAAUUUUAAUAUAUCAAGAAUUCACAACAACGGAAAAAUUUAUCAGAAACUCAAAACAAAAAUC

Reference

1 PMID:24475082
"Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons";
Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ;
PLoS One. 9:e86153(2014).