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BaseInfo

ncRNA ID	ath-miR854c
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr5:11838096-11838316 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	3 - GAUGAGGAUAGGGAGGAGGAG - 23
Stem-loop(if miRNA)	--U AG A   -          U    --------------   GAGCAUGUAUCAUUUCAGUGAGCACGUACCUCCAGCGCGGGAGAGCAAGAGCUUGAGUGAAGCUCACAGAA CGGA   G  G UAG GGAGGAGGAG AUGA              UAC                                                                       C ||||   |  | ||| |||||||||| ||||              ||| GCCU   C  C AUC UCUUCUCUUC GUCG              UCU                                                                       C     UAU GA -   A          -    AAUAGAACAGACAG   UUGCACUACCGAAACUUCGUGAACUAUUCAUCGGAUAGAACAAAGAACGUGGUGGAGACGUUGAAUGACAA
Stem-loop sequence	CGGAUGAGGAUAGGGAGGAGGAGUAUGAUACGAGCAUGUAUCAUUUCAGUGAGCACGUACCUCCAGCGCGGGAGAGCAAGAGCUUGAGUGAAGCUCACAGAACCAACAGUAAGUUGCAGAGGUGGUGCAAGAAACAAGAUAGGCUACUUAUCAAGUGCUUCAAAGCCAUCACGUUUCUGACAGACAAGAUAAGCUGCUUCUCUUCUACUACAGCUAUUCCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK230139.1	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   ||||||||||||||||||||| targets:1884   CUCCUCCUCCCUAUCCUCAUC   1904 Target Full Sequence	0.0	Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL22-82-O04	NA	coding protein	psRNATarget
NM_120592.5	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   ||||||||||||||||||=|| targets:820   CUCCUCCUCCCUAUCCUCGUC   840 Target Full Sequence	1.5	Arabidopsis thaliana Single-stranded nucleic acid binding R3H protein mRNA	Single-stranded nucleic acid binding R3H protein(AT5G05100)	coding protein	psRNATarget
AY059918.1	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   ||||||||||||||||||=|| targets:791   CUCCUCCUCCCUAUCCUCGUC   811 Target Full Sequence	1.5	Arabidopsis thaliana Unknown protein (MUG13.4) mRNA, complete cds	NA	coding protein	psRNATarget
BX829482.1	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   ||||||||||||||||||=|| targets:749   CUCCUCCUCCCUAUCCUCGUC   769 Target Full Sequence	1.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB16ZD08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX830751.1	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   ||||||||||||||||||=|| targets:751   CUCCUCCUCCCUAUCCUCGUC   771 Target Full Sequence	1.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS1ZF03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX833598.1	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   ||||||||||||||||||=|| targets:673   CUCCUCCUCCCUAUCCUCGUC   693 Target Full Sequence	1.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL65ZC01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY114694.1	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   ||||||||||||||||||=|| targets:536   CUCCUCCUCCCUAUCCUCGUC   556 Target Full Sequence	1.5	Arabidopsis thaliana unknown protein (At5g05100) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001343615.1	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   =||||||||=||||||||||= targets:109   UUCCUCCUCUCUAUCCUCAUU   129 Target Full Sequence	2.5	Arabidopsis thaliana DUF538 family protein (Protein of unknown function, DUF538) mRNA	DUF538 family protein (Protein of unknown function, DUF538)(AT5G19590)	coding protein	psRNATarget
NM_121964.4	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   =||||||||=||||||||||= targets:109   UUCCUCCUCUCUAUCCUCAUU   129 Target Full Sequence	2.5	Arabidopsis thaliana DUF538 family protein (Protein of unknown function, DUF538) mRNA	DUF538 family protein (Protein of unknown function, DUF538)(AT5G19590)	coding protein	psRNATarget
BT002457.1	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   =||||||||=||||||||||= targets:50   UUCCUCCUCUCUAUCCUCAUU   70 Target Full Sequence	2.5	Arabidopsis thaliana putative protein (At5g19590) mRNA, complete cds	NA	coding protein	psRNATarget
BX833974.1	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   =||||||||=||||||||||= targets:40   UUCCUCCUCUCUAUCCUCAUU   60 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL87ZG02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX833530.1	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   =||||||||=||||||||||= targets:14   UUCCUCCUCUCUAUCCUCAUU   34 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL60ZE05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT006550.1	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   =||||||||=||||||||||= targets:16   UUCCUCCUCUCUAUCCUCAUU   36 Target Full Sequence	2.5	Arabidopsis thaliana At5g19590 gene, complete cds	NA	coding protein	psRNATarget
NM_104254.4	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   *||=|||||||||||*||||| targets:378   AUCUUCCUCCCUAUCGUCAUC   398 Target Full Sequence	2.5	Arabidopsis thaliana O-fucosyltransferase family protein mRNA	O-fucosyltransferase family protein(AT1G53770)	coding protein	psRNATarget
NM_001198286.1	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   *||=|||||||||||*||||| targets:273   AUCUUCCUCCCUAUCGUCAUC   293 Target Full Sequence	2.5	Arabidopsis thaliana O-fucosyltransferase family protein mRNA	O-fucosyltransferase family protein(AT1G53770)	coding protein	psRNATarget
AK228897.1	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   *||=|||||||||||*||||| targets:245   AUCUUCCUCCCUAUCGUCAUC   265 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-21-F18	NA	coding protein	psRNATarget
BX815682.1	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   *||=|||||||||||*||||| targets:238   AUCUUCCUCCCUAUCGUCAUC   258 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS83ZE09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT022031.1	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   *||=|||||||||||*||||| targets:238   AUCUUCCUCCCUAUCGUCAUC   258 Target Full Sequence	2.5	Arabidopsis thaliana At1g53770 gene, complete cds	NA	coding protein	psRNATarget
BX817105.1	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   *||=|||||||||||*||||| targets:214   AUCUUCCUCCCUAUCGUCAUC   234 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH85ZF11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
KJ138963.1	ncRNA:21   GAGGAGGAGGGAUAGGAGUAG   1   *||=|||||||||||*||||| targets:223   AUCUUCCUCCCUAUCGUCAUC   243 Target Full Sequence	2.5	Arabidopsis thaliana glycosyltransferase (AT1G53770) mRNA, partial cds	NA	coding protein	psRNATarget

Reference

1	PMID:17189346 "A family of microRNAs present in plants and animals"; Arteaga-Vazquez M, Caballero-Perez J, Vielle-Calzada JP; Plant Cell. 18:3355-3369(2006).