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BaseInfo

ncRNA ID	gma-miR1516b
Species	Glycine max
Class	miRNA
Genome position	chr9:2534285-2534435 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	69 - AGCUUCUCUACAGAAAAUAUA - 89
Stem-loop(if miRNA)	GAU      U AG   UU          GAAUAUA   AUAUAAGUCAUAAGUGCUUCUGAGAGCUUCUCUACAGA    UUGUUU G  UAU  GGGUGGGGUG       ACU                                      A    |||||| |  |||  ||||||||||       |||                                      A    GACAAA C  AUG  UCCAUCUUAC       AUU                                      A CGC      - CU   UU          ---GAAA   CUCGAAAAGUUUUGAAGAGAUGGUUUUUUUCAACAUAU
Stem-loop sequence	GAUUUGUUUUGAGUAUUUGGGUGGGGUGGAAUAUAACUAUAUAAGUCAUAAGUGCUUCUGAGAGCUUCUCUACAGAAAAUAUACAACUUUUUUUGGUAGAGAAGUUUUGAAAAGCUCUUAAAAGCAUUCUACCUUUGUAUCCAAACAGCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014774046.1	ncRNA:21   AUAUAAAAGACAUCUCUUCGA   1   ||||||||||||||||||||| targets:636   UAUAUUUUCUGUAGAGAAGCU   656 Target Full Sequence	0.0	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X2, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget
XM_014774047.1	ncRNA:21   AUAUAAAAGACAUCUCUUCGA   1   ||||||||||||||||||||| targets:815   UAUAUUUUCUGUAGAGAAGCU   835 Target Full Sequence	0.0	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X3, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget
XM_014774048.1	ncRNA:21   AUAUAAAAGACAUCUCUUCGA   1   ||||||||||||||||||||| targets:834   UAUAUUUUCUGUAGAGAAGCU   854 Target Full Sequence	0.0	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X4, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget
XM_014774045.1	ncRNA:21   AUAUAAAAGACAUCUCUUCGA   1   ||||||||||||||||||||| targets:912   UAUAUUUUCUGUAGAGAAGCU   932 Target Full Sequence	0.0	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X1, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget
BT094466.1	ncRNA:21   AUAUAAAAGACAUCUCUUCGA   1   |||||||||*||||||||||| targets:116   UAUAUUUUCAGUAGAGAAGCU   136 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-18P7 unknown mRNA	NA	coding protein	psRNATarget
XM_006604588.2	ncRNA:21   AUAUAAAAGACAUCUCUUCGA   1   *=*|||||||||||||||||* targets:7   AGGAUUUUCUGUAGAGAAGCA   27 Target Full Sequence	2.0	PREDICTED: Glycine max protein CHROMOSOME TRANSMISSION FIDELITY 7-like (LOC100809303), transcript variant X2, mRNA	protein CHROMOSOME TRANSMISSION FIDELITY 7-like(LOC100809303)	coding protein	psRNATarget
XM_014772120.1	ncRNA:21   AUAUAAAAGACAUCUCUUCGA   1   *=*|||||||||||||||||* targets:51   AGGAUUUUCUGUAGAGAAGCA   71 Target Full Sequence	2.0	PREDICTED: Glycine max protein CHROMOSOME TRANSMISSION FIDELITY 7-like (LOC100811441), transcript variant X2, mRNA	protein CHROMOSOME TRANSMISSION FIDELITY 7-like(LOC100811441)	coding protein	psRNATarget

Reference

1	PMID:21751852 "Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome"; Radwan O, Liu Y, Clough SJ; Mol Plant Microbe Interact. 24:958-972(2011).