Search result

BaseInfo

ncRNA ID	gma-miR862b
Species	Glycine max
Class	miRNA
Genome position	chr8:46853906-46853991 [+]
Reference genome	v1.0
Source	miRBase
Length	19
Mature sequence(if miRNA)	66 - GCUGGAUGUCUUUGAAGGA - 84
Stem-loop(if miRNA)	C        U          CCGU   C    AUAUAU GUUCC UCAAAGGC UCCAGUAUUC    AUU AUUC      A ||||| |||||||| ||||||||||    ||| ||||      C CAAGG AGUUUCUG AGGUCGUAAG    UAG UAAG      C      A        U          ---U   U    AUCGAU
Stem-loop sequence	GUUCCCUCAAAGGCUUCCAGUAUUCCCGUAUUCAUUCAUAUAUACCUAGCUAGAAUUGAUUGAAUGCUGGAUGUCUUUGAAGGAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003545177.3	ncRNA:19   AGGAAGUUUCUGUAGGUCG   1   ||||||||||||||||||* targets:295   UCCUUCAAAGACAUCCAGA   313 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized protein At3g28850-like (LOC100816516), mRNA	uncharacterized protein At3g28850-like(LOC100816516)	coding protein	psRNATarget
XM_014764510.1	ncRNA:19   AGGAAGUUUCUGUAGGUCG   1   ||*|||||||||||||||= targets:1487   UCGUUCAAAGACAUCCAGU   1505 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100799047 (LOC100799047), transcript variant X6, mRNA	uncharacterized LOC100799047(LOC100799047)	coding protein	psRNATarget
XM_014764511.1	ncRNA:19   AGGAAGUUUCUGUAGGUCG   1   ||*|||||||||||||||= targets:1584   UCGUUCAAAGACAUCCAGU   1602 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100799047 (LOC100799047), transcript variant X7, mRNA	uncharacterized LOC100799047(LOC100799047)	coding protein	psRNATarget
XM_006590878.2	ncRNA:19   AGGAAGUUUCUGUAGGUCG   1   ||*|||||||||||||||= targets:1691   UCGUUCAAAGACAUCCAGU   1709 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100817330 (LOC100817330), transcript variant X4, mRNA	uncharacterized LOC100817330(LOC100817330)	coding protein	psRNATarget
XM_014764509.1	ncRNA:19   AGGAAGUUUCUGUAGGUCG   1   ||*|||||||||||||||= targets:1918   UCGUUCAAAGACAUCCAGU   1936 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100799047 (LOC100799047), transcript variant X5, mRNA	uncharacterized LOC100799047(LOC100799047)	coding protein	psRNATarget
XM_014764508.1	ncRNA:19   AGGAAGUUUCUGUAGGUCG   1   ||*|||||||||||||||= targets:1931   UCGUUCAAAGACAUCCAGU   1949 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100799047 (LOC100799047), transcript variant X4, mRNA	uncharacterized LOC100799047(LOC100799047)	coding protein	psRNATarget
XM_014764013.1	ncRNA:19   AGGAAGUUUCUGUAGGUCG   1   ||*|||||||||||||||= targets:1931   UCGUUCAAAGACAUCCAGU   1949 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100817330 (LOC100817330), transcript variant X3, mRNA	uncharacterized LOC100817330(LOC100817330)	coding protein	psRNATarget
XM_006590877.2	ncRNA:19   AGGAAGUUUCUGUAGGUCG   1   ||*|||||||||||||||= targets:2132   UCGUUCAAAGACAUCCAGU   2150 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100817330 (LOC100817330), transcript variant X2, mRNA	uncharacterized LOC100817330(LOC100817330)	coding protein	psRNATarget
XM_014764505.1	ncRNA:19   AGGAAGUUUCUGUAGGUCG   1   ||*|||||||||||||||= targets:2171   UCGUUCAAAGACAUCCAGU   2189 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100799047 (LOC100799047), transcript variant X1, mRNA	uncharacterized LOC100799047(LOC100799047)	coding protein	psRNATarget
XM_014764507.1	ncRNA:19   AGGAAGUUUCUGUAGGUCG   1   ||*|||||||||||||||= targets:2190   UCGUUCAAAGACAUCCAGU   2208 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100799047 (LOC100799047), transcript variant X3, mRNA	uncharacterized LOC100799047(LOC100799047)	coding protein	psRNATarget
XM_014764506.1	ncRNA:19   AGGAAGUUUCUGUAGGUCG   1   ||*|||||||||||||||= targets:2231   UCGUUCAAAGACAUCCAGU   2249 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100799047 (LOC100799047), transcript variant X2, mRNA	uncharacterized LOC100799047(LOC100799047)	coding protein	psRNATarget
XM_003538994.3	ncRNA:19   AGGAAGUUUCUGUAGGUCG   1   ||*|||||||||||||||= targets:2296   UCGUUCAAAGACAUCCAGU   2314 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100817330 (LOC100817330), transcript variant X1, mRNA	uncharacterized LOC100817330(LOC100817330)	coding protein	psRNATarget
XM_003518385.3	ncRNA:19   AGGAAGUUUCUGUAGGUCG   1   |||||||||||=||||||* targets:309   UCCUUCAAAGAUAUCCAGA   327 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized protein At5g39865-like (LOC100791927), mRNA	uncharacterized protein At5g39865-like(LOC100791927)	coding protein	psRNATarget
XM_003544256.3	ncRNA:19   AGGAAGUUUCUGUAGGUCG   1   ||||||||||||||=|||* targets:698   UCCUUCAAAGACAUUCAGA   716 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized protein At3g28850-like (LOC100778900), mRNA	uncharacterized protein At3g28850-like(LOC100778900)	coding protein	psRNATarget
XM_003552788.3	ncRNA:19   AGGAAGUUUCUGUAGGUCG   1   |||||||||||||||||*= targets:220   UCCUUCAAAGACAUCCAAU   238 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized protein At3g28850-like (LOC100784009), mRNA	uncharacterized protein At3g28850-like(LOC100784009)	coding protein	psRNATarget
XM_003537446.3	ncRNA:19   AGGAAGUUUCUGUAGGUCG   1   |||||||||||||||||*= targets:281   UCCUUCAAAGACAUCCAAU   299 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized protein At5g39865-like (LOC100807688), mRNA	uncharacterized protein At5g39865-like(LOC100807688)	coding protein	psRNATarget
XM_006602913.2	ncRNA:19   AGGAAGUUUCUGUAGGUCG   1   *=||||||||||||||||* targets:3472   AUCUUCAAAGACAUCCAGA   3490 Target Full Sequence	3.0	PREDICTED: Glycine max DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial-like (LOC100777921), transcript variant X1, mRNA	DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial-like(LOC100777921)	coding protein	psRNATarget

Reference

1	PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).
2	PMID:24475082 "Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons"; Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ; PLoS One. 9:e86153(2014).