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BaseInfo

ncRNA ID	gma-miR5037a
Species	Glycine max
Class	miRNA
Genome position	chr8:46837960-46838110 [+]
Reference genome	v1.0
Source	miRBase
Length	22
Mature sequence(if miRNA)	61 - GCCUCAAAGGCUUCCACUACUG - 82
Stem-loop(if miRNA)	AAUAAACAAGUUUCUUAUA G      C  GAAGUUGUACAUAGAGCAUGCUUUUUAGUGGCCUCAAAGGCUUCCACUACUGCA                    G UCUAUG AU                                                      U                    | |||||| ||                                                      G                    A CGGAAA UU                                                      U ------------------A -      -  ACCUGGAGGUCCGUAGGUGAUGAUGAACAAAGUCCUAUAUAAUUUGGCUGUCUU
Stem-loop sequence	AAUAAACAAGUUUCUUAUAGGUCUAUGCAUGAAGUUGUACAUAGAGCAUGCUUUUUAGUGGCCUCAAAGGCUUCCACUACUGCAUGUUUCUGUCGGUUUAAUAUAUCCUGAAACAAGUAGUAGUGGAUGCCUGGAGGUCCAUUAAAGGCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003550815.3	ncRNA:22   GUCAUCACCUUCGGAAACUCCG   1   |||||*|||||||||||||||* targets:776   CAGUAUUGGAAGCCUUUGAGGG   797 Target Full Sequence	2.0	PREDICTED: Glycine max scarecrow-like protein 21 (LOC100813548), mRNA	scarecrow-like protein 21(LOC100813548)	coding protein	psRNATarget
XM_003525617.3	ncRNA:22   GUCAUCACCUUCGGAAACUCCG   1   ||*||*|||||||||||||||* targets:951   CAAUAUUGGAAGCCUUUGAGGG   972 Target Full Sequence	2.0	PREDICTED: Glycine max scarecrow-like protein 21 (LOC100815959), mRNA	scarecrow-like protein 21(LOC100815959)	coding protein	psRNATarget
XM_006583595.2	ncRNA:22   GUCAUC-ACCUUCGGAAACUCCG   1   ||||=|-|||||||||||||||| targets:835   CAGUGGAUGGAAGCCUUUGAGGC   857 Target Full Sequence	3.0	PREDICTED: Glycine max trihelix transcription factor GT-3b-like (LOC100778195), mRNA	trihelix transcription factor GT-3b-like(LOC100778195)	coding protein	psRNATarget
XM_003551512.3	ncRNA:22   GUCAUC-ACCUUCGGAAACUCCG   1   ||||=|-|||||||||||||||| targets:880   CAGUGGAUGGAAGCCUUUGAGGC   902 Target Full Sequence	3.0	PREDICTED: Glycine max trihelix transcription factor GT-3b-like (LOC100794230), mRNA	trihelix transcription factor GT-3b-like(LOC100794230)	coding protein	psRNATarget
XM_003539885.2	ncRNA:22   GUCAUCACCUUCGGAAACUCCG   1   **||=|||*||||||||||||= targets:1517   GCGUGGUGAAAGCCUUUGAGGU   1538 Target Full Sequence	3.0	PREDICTED: Glycine max O-acyltransferase WSD1 (LOC100816273), mRNA	O-acyltransferase WSD1(LOC100816273)	coding protein	psRNATarget
AK286593.1	ncRNA:22   GUCAUCACCUUCGGAAACUCCG   1   **||=|||*||||||||||||= targets:1524   GCGUGGUGAAAGCCUUUGAGGU   1545 Target Full Sequence	3.0	Glycine max cDNA, clone: GMFL01-32-D23	NA	coding protein	psRNATarget

Reference

1	PMID:21751852 "Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome"; Radwan O, Liu Y, Clough SJ; Mol Plant Microbe Interact. 24:958-972(2011).