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BaseInfo

ncRNA ID	gma-miR395f
Species	Glycine max
Class	miRNA
Genome position	chr8:40804197-40804318 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UGAAGUGUUUGGGGGAACUUU - 31
Stem-loop(if miRNA)	GC   CU  UG         UG         -CG -   ----      G      UC  UAU   UGU  CU  GAGUUCCUC  AGCACUUCA   C GUG    GGGCUA UUCUAU  AA   U   |||  ||  |||||||||  |||||||||   | |||    |||||| ||||||  ||   A   ACA  GG  UUCAAGGGG  UUGUGAAGU   G CAC    CCUGAU AAGAUA  UU   C CA   UG  UU         GU         AAA U   UACU      -      GA  UAC
Stem-loop sequence	GCUGUCUCUUGGAGUUCCUCUGAGCACUUCACGCGUGGGGCUAGUUCUAUUCAAUAUUACCAUUUAGAUAGAAUAGUCCUCAUCACUGAAAUGAAGUGUUUGGGGGAACUUUUGGGUACAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014770651.1	ncRNA:21   UUUCAAGGGGGUUUGUGAAGU   1   |||||||=||||||||||||| targets:214   AAAGUUCUCCCAAACACUUCA   234 Target Full Sequence	1.0	PREDICTED: Glycine max sulfate transporter 2.1-like (LOC100814993), mRNA	sulfate transporter 2.1-like(LOC100814993)	coding protein	psRNATarget
XM_003552772.3	ncRNA:21   UUUCAAGGGGGUUUGUGAAGU   1   |||||||=||||||||||||| targets:107   AAAGUUCUCCCAAACACUUCA   127 Target Full Sequence	1.0	PREDICTED: Glycine max sulfate transporter 2.1-like (LOC100817831), mRNA	sulfate transporter 2.1-like(LOC100817831)	coding protein	psRNATarget
XM_003538469.3	ncRNA:21   UUUCAAGGGGGUUUGUGAAGU   1   |||||||=||||||||||||| targets:147   AAAGUUCUCCCAAACACUUCA   167 Target Full Sequence	1.0	PREDICTED: Glycine max sulfate transporter 2.1-like (LOC100781327), mRNA	sulfate transporter 2.1-like(LOC100781327)	coding protein	psRNATarget
XM_003531315.2	ncRNA:21   UUUCAAGGGGGUUUGUGAAGU   1   |=|||||=||||||||||||| targets:144   AGAGUUCUCCCAAACACUUCA   164 Target Full Sequence	1.0	PREDICTED: Glycine max sulfate transporter 2.1-like (LOC100775538), mRNA	sulfate transporter 2.1-like(LOC100775538)	coding protein	psRNATarget
XM_014767214.1	ncRNA:21   UUUCAAGGGGGUUUGUGAAGU   1   |||||||*||||||||||||| targets:514   AAAGUUCACCCAAACACUUCA   534 Target Full Sequence	1.0	PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X3, mRNA	low affinity sulfate transporter 3-like(LOC100776591)	coding protein	psRNATarget
XM_006596268.2	ncRNA:21   UUUCAAGGGGGUUUGUGAAGU   1   |||||||*||||||||||||| targets:515   AAAGUUCACCCAAACACUUCA   535 Target Full Sequence	1.0	PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X2, mRNA	low affinity sulfate transporter 3-like(LOC100776591)	coding protein	psRNATarget
XM_003543724.3	ncRNA:21   UUUCAAGGGGGUUUGUGAAGU   1   |||||||*||||||||||||| targets:329   AAAGUUCACCCAAACACUUCA   349 Target Full Sequence	1.0	PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100798723), mRNA	low affinity sulfate transporter 3-like(LOC100798723)	coding protein	psRNATarget
XM_006596269.2	ncRNA:21   UUUCAAGGGGGUUUGUGAAGU   1   |||||||*||||||||||||| targets:518   AAAGUUCACCCAAACACUUCA   538 Target Full Sequence	1.0	PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X4, mRNA	low affinity sulfate transporter 3-like(LOC100776591)	coding protein	psRNATarget
XM_003544137.3	ncRNA:21   UUUCAAGGGGGUUUGUGAAGU   1   |||||||*||||||||||||| targets:506   AAAGUUCACCCAAACACUUCA   526 Target Full Sequence	1.0	PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X1, mRNA	low affinity sulfate transporter 3-like(LOC100776591)	coding protein	psRNATarget
XM_003526548.3	ncRNA:21   UUUCAAGGGGGUUUGUGAAGU   1   |=|||||**|||||||||||| targets:258   AGAGUUCAACCAAACACUUCA   278 Target Full Sequence	2.5	PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100805269), mRNA	low affinity sulfate transporter 3-like(LOC100805269)	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).