Search result

BaseInfo

ncRNA ID gma-miR4415b-5p
Species Glycine max
Class miRNA
Genome position chr8:23142767-23142922 [+]
Reference genome v1.0
Source miRBase
Length 24
Mature sequence(if miRNA) 10 - AAGUUGUGAUGGGAAUCAAUGGCA - 33
Stem-loop(if miRNA)      C    A                       -CAA    GCCAAGAAAAUGAAAUCCCAUUAUCUUCUCACAGU
GGCUG AUCA GUUGUGAUGGGAAUCAAUGGCAG    UCAC                                   A
||||| |||| |||||||||||||||||||||||    ||||                                   U
CUGAC UGGU CAACACUACUCUUAGUUACCGUC    CCUA                                   A
     C    A                       AUUA    AAUAUAGGCAGUUGUGGUCAAUCGGAUUAAUUACU
Stem-loop sequence GGCUGCAUCAAGUUGUGAUGGGAAUCAAUGGCAGCAAUCACGCCAAGAAAAUGAAAUCCCAUUAUCUUCUCACAGUAUAUCAUUAAUUAGGCUAACUGGUGUUGACGGAUAUAAAUCCAUUACUGCCAUUGAUUCUCAUCACAACAUGGUCCAGUC

Reference

1 PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses";
Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R;
BMC Genomics. 12:307(2011).
2 PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs";
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC;
Genes Dev. 25:2540-2553(2011).