Search result

BaseInfo

ncRNA ID gma-miR1520q
Species Glycine max
Class miRNA
Genome position chr8:13165801-13165916 [-]
Reference genome v1.0
Source miRBase
Length 24
Mature sequence(if miRNA) 8 - AUUGACCAAUCAGAACAUGACACA - 31
Stem-loop(if miRNA) UGG     C        A       AA               UG    G   A  CC
   UGUCA GUGUCAUG UCUGAUU  UUAAUAAAAAUAACA  ACAU UCA CU  A
   ||||| |||||||| |||||||  |||||||||||||||  |||| ||| ||  U
   ACAGU CACAGUAC AGACUAA  AGUUAUUUUUGUUGU  UGUA AGU GA  A
-UA     A        A       CC               UA    A   A  AA
Stem-loop sequence UGGUGUCACGUGUCAUGAUCUGAUUAAUUAAUAAAAAUAACAUGACAUGUCAACUCCAUAAAAGAUGAAAUGUAUUGUUGUUUUUAUUGACCAAUCAGAACAUGACACAUGACAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK245140.1
ncRNA:24   ACACAGUACAAGACUAACCAGUUA   1
  *|||||||*||||*||||||||||
targets:1515   CGUGUCAUAUUCUAAUUGGUCAAU   1538

2.5 Glycine max cDNA, clone: GMFL01-21-P01 NA coding protein psRNATarget

Reference

1 PMID:20122185
"Prediction of novel miRNAs and associated target genes in Glycine max";
Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G;
BMC Bioinformatics. 11 Suppl 1:S14(2010).