ncRNA ID | gma-miR1520q |
Species | Glycine max |
Class | miRNA |
Genome position | chr8:13165801-13165916 [-] |
Reference genome | v1.0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 8 - AUUGACCAAUCAGAACAUGACACA - 31 |
Stem-loop(if miRNA) |
UGG     C        A       AA               UG    G   A  CC    UGUCA GUGUCAUG UCUGAUU  UUAAUAAAAAUAACA  ACAU UCA CU  A    ||||| |||||||| |||||||  |||||||||||||||  |||| ||| ||  U    ACAGU CACAGUAC AGACUAA  AGUUAUUUUUGUUGU  UGUA AGU GA  A -UA     A        A       CC               UA    A   A  AA |
Stem-loop sequence | UGGUGUCACGUGUCAUGAUCUGAUUAAUUAAUAAAAAUAACAUGACAUGUCAACUCCAUAAAAGAUGAAAUGUAUUGUUGUUUUUAUUGACCAAUCAGAACAUGACACAUGACAAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK245140.1 |
|
2.5 | Glycine max cDNA, clone: GMFL01-21-P01 | NA | coding protein | psRNATarget |
1 | PMID:20122185
"Prediction of novel miRNAs and associated target genes in Glycine max"; Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G; BMC Bioinformatics. 11 Suppl 1:S14(2010). |