| ncRNA ID | ath-miR5643a |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr5:11667797-11667879 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 61 - AGGCUUUUAAGAUCUGGUUGC - 81 |
| Stem-loop(if miRNA) |
G UA CG U UU CU CU UGUAGCCG AUC UA GAGUCU GU UUGUAUCUU A |||||||| ||| || |||||| || ||||||||| GCGUUGGU UAG AU UUCGGA UA AACAUAGGA A A -C -A U UU -U AC |
| Stem-loop sequence | GUGUAGCCGUAAUCCGUAUGAGUCUUUGUCUUUGUAUCUUCUAACAAGGAUACAAUAUUUAGGCUUUUAAGAUCUGGUUGCGA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_179615.2 |
|
1.0 | Arabidopsis thaliana hypothetical protein partial mRNA | hypothetical protein(AT2G08986) | coding protein | psRNATarget | |||||||||
| NM_103377.1 |
|
2.0 | Arabidopsis thaliana hypothetical protein partial mRNA | hypothetical protein(AT1G38790) | coding protein | psRNATarget | |||||||||
| NM_179615.2 |
|
2.0 | Arabidopsis thaliana hypothetical protein partial mRNA | hypothetical protein(AT2G08986) | coding protein | psRNATarget |
| 1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |