| ncRNA ID | gma-miR1524 |
| Species | Glycine max |
| Class | miRNA |
| Genome position | chr8:3715230-3715565 [+] |
| Reference genome | v1.0 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 306 - CGAGUCCGAGGAAGGAACUCC - 326 |
| Stem-loop(if miRNA) |
----- ACUUA A CACUCU C AGACGAUAG -- AGAAAGACGUUUCCUUCCCAGAUCCUUCUAGACCAUUUGCAAACCGUCUCCUUCCCCGAAUCCAUUCUCCAAACCCUCGAUCCUUGAGGAGC GCG UUGGAGUUC UUCUUCG CUCGGAAACCACUUGUUUCCAAU AUCUAAUC CAGAC UCA U ||| ||||||||| ||||||| ||||||||||||||||||||||| |||||||| ||||| ||| C CGC AACCUCAAG AAGGAGC GAGCCUUUGGUGAACAAAGGUUA UGGAUUAG UCCUU AUC C CAACC ----- G ----CU U --------- UC AAGGAUAUUAAGGGAAAGUCUGAGUACUUCUGCGAGUACGAGGUGGCGCUGCCGUGUUAACUGCCGCCUCUGGCCUCGCGGCAGUGCCACCA |
| Stem-loop sequence | GCGACUUAUUGGAGUUCAUUCUUCGCACUCUCUCGGAAACCACUUGUUUCCAAUCAUCUAAUCAGACGAUAGCAGACUCAAGAAAGACGUUUCCUUCCCAGAUCCUUCUAGACCAUUUGCAAACCGUCUCCUUCCCCGAAUCCAUUCUCCAAACCCUCGAUCCUUGAGGAGCUCCACCACCGUGACGGCGCUCCGGUCUCCGCCGUCAAUUGUGCCGUCGCGGUGGAGCAUGAGCGUCUUCAUGAGUCUGAAAGGGAAUUAUAGGAACUACUUUCCUGAUUAGGUUAUUGGAAACAAGUGGUUUCCGAGUCCGAGGAAGGAACUCCAACGCCCAAC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK245663.1 |
|
2.0 | Glycine max cDNA, clone: GMFL01-37-A01 | NA | coding protein | psRNATarget | |||||||||
| XM_003518748.3 |
|
2.0 | PREDICTED: Glycine max phosphatidylinositol 4-kinase gamma 5 (LOC100816579), mRNA | phosphatidylinositol 4-kinase gamma 5(LOC100816579) | coding protein | psRNATarget | |||||||||
| AK285572.1 |
|
3.0 | Glycine max cDNA, clone: GMFL01-12-N21 | NA | coding protein | psRNATarget | |||||||||
| XM_003544434.3 |
|
3.0 | PREDICTED: Glycine max subtilisin-like protease SBT1.7 (LOC100793808), mRNA | subtilisin-like protease SBT1.7(LOC100793808) | coding protein | psRNATarget |
| 1 | PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008). |