Search result

BaseInfo

ncRNA ID gma-miR6300
Species Glycine max
Class miRNA
Genome position chr8:3178112-3178362 [-]
Reference genome v1.0
Source miRBase
Length 18
Mature sequence(if miRNA) 15 - GUCGUUGUAGUAUAGUGG - 32
Stem-loop(if miRNA) A   AAA                       A     UUU    AAU  AAU      U    AUAAUAA   U  -  A   UA CGAUAGCAUUUGAUUAUAUUUUUGUUUUAAAGUUACAUUUGAUUAUAU
 GGU   AAUACUUACCACUAUAUUACAAC ACUUG   GUGA   UC   GGUAAU UUAA       AUG UU UA UAU  C                                                C
 |||   ||||||||||||||||||||||| |||||   ||||   ||   |||||| ||||       ||| || || |||  |
 CCG   UUAUGAAUGGUGAUAUGAUGUUG UGAAC   UACU   AG   UCAUUA AAUU       UAU AG UA UGU  U                                                G
-   CCC                       C     ---    AAU  --C      U    ------A   -  A  -   -- UUUUCAACGUACUAUAACCUACUUAUACUGAAUGUAAUAUCGGCUAUC
Stem-loop sequence AGGUAAAAAUACUUACCACUAUAUUACAACAACUUGUUUGUGAAAUUCAAUGGUAAUUUUAAAUAAUAAAUGUUUUAAUAUUACCGAUAGCAUUUGAUUAUAUUUUUGUUUUAAAGUUACAUUUGAUUAUAUCGCUAUCGGCUAUAAUGUAAGUCAUAUUCAUCCAAUAUCAUGCAACUUUUUUGUAUAGAUAUAUUAAUAUUACUCGAUAAUCAUCAAGUCGUUGUAGUAUAGUGGUAAGUAUUCCCGCC

Reference

1 PMID:22559273
"Genome organization and characteristics of soybean microRNAs";
Turner M, Yu O, Subramanian S;
BMC Genomics. 13:169(2012).