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BaseInfo

ncRNA ID	gma-miR171u
Species	Glycine max
Class	miRNA
Genome position	chr8:921796-921897 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UGAUUGAGCCGUGCCAAUAUC - 31
Stem-loop(if miRNA)	U     ----        A  A         A      -UU   U   G   G  GUGGG    GAUGUUGG AC GUUCAAUCA AUCAAA   UCC AAU AUU G  |||||    |||||||| || ||||||||| ||||||   ||| ||| |||  CAUCC    CUAUAACC UG CGAGUUAGU UAGUUU   AGG UUG UAG G U     UUAA        G  C         A      CUU   -   G   U
Stem-loop sequence	UGUGGGGAUGUUGGAACAGUUCAAUCAAAUCAAAUUUCCUAAUGAUUGGGUGAUGGUUGGAUUCUUUGAUAUGAUUGAGCCGUGCCAAUAUCAAUUCCUACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014773107.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1516   GAUAUUGGCGCGGCUCAAUCA   1536 Target Full Sequence	1.5	PREDICTED: Glycine max scarecrow-like protein 6 (LOC100805945), mRNA	scarecrow-like protein 6(LOC100805945)	coding protein	psRNATarget
XM_006573169.2	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1754   GAUAUUGGCGCGGCUCAAUCA   1774 Target Full Sequence	1.5	PREDICTED: Glycine max scarecrow-like protein 27 (LOC100792973), mRNA	scarecrow-like protein 27(LOC100792973)	coding protein	psRNATarget
XM_006576371.2	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1633   GAUAUUGGCGCGGCUCAAUCA   1653 Target Full Sequence	1.5	PREDICTED: Glycine max scarecrow-like protein 6 (LOC100794596), mRNA	scarecrow-like protein 6(LOC100794596)	coding protein	psRNATarget
XM_003516392.3	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1783   GAUAUUGGCGCGGCUCAAUCA   1803 Target Full Sequence	1.5	PREDICTED: Glycine max scarecrow-like protein 6 (LOC100801785), mRNA	scarecrow-like protein 6(LOC100801785)	coding protein	psRNATarget
XM_014763627.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   *|**|||*||||||||||||| targets:281   CACUUUGCCACGGCUCAAUCA   301 Target Full Sequence	3.0	PREDICTED: Glycine max cysteine-rich repeat secretory protein 55-like (LOC106795088), mRNA	cysteine-rich repeat secretory protein 55-like(LOC106795088)	coding protein	psRNATarget
XM_006591692.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   *|**|||*||||||||||||| targets:202   CACUUUGCCACGGCUCAAUCA   222 Target Full Sequence	3.0	PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 2 (LOC100816244), mRNA	cysteine-rich receptor-like protein kinase 2(LOC100816244)	coding protein	psRNATarget
XM_006591698.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   *|**|||*||||||||||||| targets:202   CACUUUGCCACGGCUCAAUCA   222 Target Full Sequence	3.0	PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 2 (LOC100776689), mRNA	cysteine-rich receptor-like protein kinase 2(LOC100776689)	coding protein	psRNATarget
XM_014764184.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   *|**|||*||||||||||||| targets:302   CACUUUGCCACGGCUCAAUCA   322 Target Full Sequence	3.0	PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 2 (LOC100784716), transcript variant X2, mRNA	cysteine-rich receptor-like protein kinase 2(LOC100784716)	coding protein	psRNATarget
XM_014764181.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   *|**|||*||||||||||||| targets:299   CACUUUGUCACGGCUCAAUCA   319 Target Full Sequence	3.0	PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 2 (LOC100816764), mRNA	cysteine-rich receptor-like protein kinase 2(LOC100816764)	coding protein	psRNATarget
XM_003537359.3	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   *|**|||*||||||||||||| targets:301   CACUUUGCCACGGCUCAAUCA   321 Target Full Sequence	3.0	PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 2 (LOC100784716), transcript variant X3, mRNA	cysteine-rich receptor-like protein kinase 2(LOC100784716)	coding protein	psRNATarget
XM_006591224.2	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   *|**|||*||||||||||||| targets:302   CACUUUGCCACGGCUCAAUCA   322 Target Full Sequence	3.0	PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 2 (LOC100784716), transcript variant X1, mRNA	cysteine-rich receptor-like protein kinase 2(LOC100784716)	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).