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BaseInfo

ncRNA ID	gma-miR171c-3p
Species	Glycine max
Class	miRNA
Genome position	chr7:43679648-43679751 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	10 - UUGAGCCGUGCCAAUAUCACA - 30
Stem-loop(if miRNA)	G   U  A        UG             -- G    U     AUG UUAA AAC UG GAUAUUGG  CGGUUCAAUCAGA  A GCAG GUUUU   A |||| ||| || ||||||||  |||||||||||||  | |||| ||||| AGUU UUG AC CUAUAACC  GCCGAGUUAGUUU  U UGUC CGAAA   U     A   U  A        GU             AU G    U     ACC
Stem-loop sequence	UUAAGAACUUGAGAUAUUGGUGCGGUUCAAUCAGAAGGCAGUGUUUUAUGAUCCAAAAGCUCUGUGUUAUUUGAUUGAGCCGUGCCAAUAUCACAUGUUAUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006573169.2	ncRNA:21   ACACUAUAACCGUGCCGAGUU   1   ||*|||||||||=|||||||| targets:1751   UGGGAUAUUGGCGCGGCUCAA   1771 Target Full Sequence	2.5	PREDICTED: Glycine max scarecrow-like protein 27 (LOC100792973), mRNA	scarecrow-like protein 27(LOC100792973)	coding protein	psRNATarget
XM_014773107.1	ncRNA:21   ACACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:1513   CGGGAUAUUGGCGCGGCUCAA   1533 Target Full Sequence	2.5	PREDICTED: Glycine max scarecrow-like protein 6 (LOC100805945), mRNA	scarecrow-like protein 6(LOC100805945)	coding protein	psRNATarget
XM_006576371.2	ncRNA:21   ACACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:1630   AGGGAUAUUGGCGCGGCUCAA   1650 Target Full Sequence	2.5	PREDICTED: Glycine max scarecrow-like protein 6 (LOC100794596), mRNA	scarecrow-like protein 6(LOC100794596)	coding protein	psRNATarget
XM_003516392.3	ncRNA:21   ACACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:1780   AGGGAUAUUGGCGCGGCUCAA   1800 Target Full Sequence	2.5	PREDICTED: Glycine max scarecrow-like protein 6 (LOC100801785), mRNA	scarecrow-like protein 6(LOC100801785)	coding protein	psRNATarget

Reference

1	PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max"; Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G; BMC Bioinformatics. 11 Suppl 1:S14(2010).
2	PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).