ncRNA ID | ath-miR2112-5p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr1:234006-234159 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 121 - CGCAAAUGCGGAUAUCAAUGU - 141 |
Stem-loop(if miRNA) |
GUAU  A                     C  U   A    G   AA   ACCAAUA  GGU    AGCGAAA   AC     GA AUGAUGCGCAAAUGCGGAUAU AA GUA AUCA GAC  CAA       GA   GCUC       ACA  A     || ||||||||||||||||||||| || ||| |||| |||  |||       ||   ||||       |||     CU UACUACGCGUUUACGCCUAUA UU CAU UAGU CUG  GUU       CU   UGGG       UGU  A CAGU  C                     U  C   A    A   GG   ACAAAGA  AUU    --AAAAG   AA |
Stem-loop sequence | GUAUGAAAUGAUGCGCAAAUGCGGAUAUCAAUGUAAAUCAGGACAACAAACCAAUAGAGGUGCUCAGCGAAAACAACAAAAUGUGAAAAGGGUUUAUCAGAAACAUUGGGGUCAUGAUAUACCUUUAUAUCCGCAUUUGCGCAUCAUCUCUGAC |
1 | PMID:19307293
"Computational and analytical framework for small RNA profiling by high-throughput sequencing"; Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, Montgomery TA, Gilbert SD, Dasenko M, Backman TW, Givan SA, Carrington JC; RNA. 15:992-1002(2009). |