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BaseInfo

ncRNA ID ath-miR2112-5p
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:234006-234159 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 121 - CGCAAAUGCGGAUAUCAAUGU - 141
Stem-loop(if miRNA) GUAU  A                     C  U   A    G   AA   ACCAAUA  GGU    AGCGAAA   AC
    GA AUGAUGCGCAAAUGCGGAUAU AA GUA AUCA GAC  CAA       GA   GCUC       ACA  A
    || ||||||||||||||||||||| || ||| |||| |||  |||       ||   ||||       |||
    CU UACUACGCGUUUACGCCUAUA UU CAU UAGU CUG  GUU       CU   UGGG       UGU  A
CAGU  C                     U  C   A    A   GG   ACAAAGA  AUU    --AAAAG   AA
Stem-loop sequence GUAUGAAAUGAUGCGCAAAUGCGGAUAUCAAUGUAAAUCAGGACAACAAACCAAUAGAGGUGCUCAGCGAAAACAACAAAAUGUGAAAAGGGUUUAUCAGAAACAUUGGGGUCAUGAUAUACCUUUAUAUCCGCAUUUGCGCAUCAUCUCUGAC

Reference

1 PMID:19307293
"Computational and analytical framework for small RNA profiling by high-throughput sequencing";
Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, Montgomery TA, Gilbert SD, Dasenko M, Backman TW, Givan SA, Carrington JC;
RNA. 15:992-1002(2009).