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BaseInfo

ncRNA ID	gma-miR1513a-5p
Species	Glycine max
Class	miRNA
Genome position	chr7:43245809-43245901 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UGAGAGAAAGCCAUGACUUAC - 31
Stem-loop(if miRNA)	C                         C     CA       C GGAU AGAUAUGAGAGAAAGCCAUGACUUA ACACA  UUGAAAU U |||| ||||||||||||||||||||||||| |||||  ||||||| CCUA UCUAUACUCUCUUUUGGUACUGAAU UGUGU  AAUUUUG U     A                         A     -A       A
Stem-loop sequence	GGAUCAGAUAUGAGAGAAAGCCAUGACUUACACACACAUUGAAAUCUUAGUUUUAAAUGUGUAUAAGUCAUGGUUUUCUCUCAUAUCUAAUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006584331.1	ncRNA:21   CAUUCAGUACCGAAAGAGAGU   1   |||||||||||=||||||||| targets:104   GUAAGUCAUGGUUUUCUCUCA   124 Target Full Sequence	1.5	PREDICTED: Glycine max F-box protein CPR30-like (LOC102664265), mRNA	F-box protein CPR30-like(LOC102664265)	coding protein	psRNATarget
XM_006582485.1	ncRNA:21   CAUUCAGUACCGAAAGAGAGU   1   |||||||||||||||||||*| targets:92   GUAAGUCAUGGCUUUCUCUAA   112 Target Full Sequence	1.5	PREDICTED: Glycine max F-box/kelch-repeat protein At3g23880-like (LOC102669359), mRNA	F-box/kelch-repeat protein At3g23880-like(LOC102669359)	coding protein	psRNATarget
XM_006582486.1	ncRNA:21   CAUUCAGUACCGAAAGAGAGU   1   ||||||||||||||||*|||| targets:86   GUAAGUCAUGGCUUUCCCUCA   106 Target Full Sequence	1.5	PREDICTED: Glycine max F-box/kelch-repeat protein At3g23880-like (LOC102669490), mRNA	F-box/kelch-repeat protein At3g23880-like(LOC102669490)	coding protein	psRNATarget
XM_003550011.3	ncRNA:21   CAUUCAGUACCGAAAGAGAGU   1   ||||||||||||||||||*|| targets:279   GUAAGUCAUGGCUUUCUCACA   299 Target Full Sequence	1.5	PREDICTED: Glycine max F-box/kelch-repeat protein At3g23880-like (LOC100796474), mRNA	F-box/kelch-repeat protein At3g23880-like(LOC100796474)	coding protein	psRNATarget
XM_006585753.2	ncRNA:21   CAUUCAGUACCGAAAGAGAGU   1   |||||||||||||||||||*| targets:188   GUAAGUCAUGGCUUUCUCUGA   208 Target Full Sequence	1.5	PREDICTED: Glycine max F-box/kelch-repeat protein At3g23880-like (LOC100790318), transcript variant X1, mRNA	F-box/kelch-repeat protein At3g23880-like(LOC100790318)	coding protein	psRNATarget
XM_006585746.2	ncRNA:21   CAUUCAGUACCGAAAGAGAGU   1   |||||*|||||||||||||=| targets:150   GUAAGACAUGGCUUUCUCUUA   170 Target Full Sequence	2.5	PREDICTED: Glycine max F-box/kelch-repeat protein At3g23880-like (LOC102667625), mRNA	F-box/kelch-repeat protein At3g23880-like(LOC102667625)	coding protein	psRNATarget
BT094172.1	ncRNA:21   CAUUCAGUACCGAAAGAGAGU   1   **||*|||||||*|||||||| targets:749   AAAAAUCAUGGCAUUCUCUCA   769 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-18E6 unknown mRNA	NA	coding protein	psRNATarget
XM_003528812.3	ncRNA:21   CAUUCAGUACCGAAAGAGAGU   1   **||*|||||||*|||||||| targets:973   AAAAAUCAUGGCAUUCUCUCA   993 Target Full Sequence	2.5	PREDICTED: Glycine max AT-hook motif nuclear-localized protein 9 (LOC100799791), mRNA	AT-hook motif nuclear-localized protein 9(LOC100799791)	coding protein	psRNATarget

Reference

1	PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008).
2	PMID:21751852 "Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome"; Radwan O, Liu Y, Clough SJ; Mol Plant Microbe Interact. 24:958-972(2011).