Search result

BaseInfo

ncRNA ID	gma-miR5783
Species	Glycine max
Class	miRNA
Genome position	chr7:41080128-41080211 [+]
Reference genome	v1.0
Source	miRBase
Length	22
Mature sequence(if miRNA)	53 - GACGACGACGGGGAGGACGCGC - 74
Stem-loop(if miRNA)	G  C         G    -     -G            UG G  GC GCGGUGGCG GUCC CUCCG  GUCGUCUCCGUC  C G  || ||||||||| |||| |||||  ||||||||||||  |  CG CGUCGCCGC CAGG GGGGC  CAGCAGAGGCAG  G A A  U         G    A     AG            CA G
Stem-loop sequence	GGCCGCGGUGGCGGGUCCCUCCGGGUCGUCUCCGUCUGCGGAGGACGACGGAGACGACGACGGGGAGGACGCGCCGCUGCUGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003550846.3	ncRNA:22   CGCGCAGGAGGGGCAGCAGCAG   1   ***|*||||||=|||||||||| targets:324   CAUCAUCCUCCUCGUCGUCGUC   345 Target Full Sequence	2.5	PREDICTED: Glycine max transmembrane protein 64-like (LOC100788409), mRNA	transmembrane protein 64-like(LOC100788409)	coding protein	psRNATarget
XM_003528017.3	ncRNA:22   CGCGCAGGAGGGGCAGCAGCAG   1   ***||||*|||=|||||||||| targets:202   CAUCGUCGUCCUCGUCGUCGUC   223 Target Full Sequence	2.5	PREDICTED: Glycine max aspartic proteinase Asp1-like (LOC100819172), mRNA	aspartic proteinase Asp1-like(LOC100819172)	coding protein	psRNATarget
XM_003521279.3	ncRNA:22   CGCGCAGGAGGGGCAGCAGCAG   1   ||-|*|||||||||*||||||| targets:462   GC-CCUCCUCCCCGCCGUCGUC   482 Target Full Sequence	2.5	PREDICTED: Glycine max CLIP-associated protein-like (LOC100796697), mRNA	CLIP-associated protein-like(LOC100796697)	coding protein	psRNATarget
XM_003554267.3	ncRNA:22   CGCGCAGGAGGGGCAGCAGCAG   1   ||-|*|||||||||*||||||| targets:425   GC-CCUCCUCCCCGCCGUCGUC   445 Target Full Sequence	2.5	PREDICTED: Glycine max CLIP-associated protein-like (LOC100820523), transcript variant X1, mRNA	CLIP-associated protein-like(LOC100820523)	coding protein	psRNATarget
XM_014771792.1	ncRNA:22   CGCGCAGGAGGGGCAGCAGCAG   1   ||-|*|||||||||*||||||| targets:427   GC-CCUCCUCCCCGCCGUCGUC   447 Target Full Sequence	2.5	PREDICTED: Glycine max CLIP-associated protein-like (LOC100820523), transcript variant X2, mRNA	CLIP-associated protein-like(LOC100820523)	coding protein	psRNATarget
XM_003544186.3	ncRNA:22   CGCGCAGGAGGGGCAGCAGCAG   1   *|*||*||||*||||||||||| targets:918   UCCCGGCCUCGCCGUCGUCGUC   939 Target Full Sequence	2.5	PREDICTED: Glycine max transport inhibitor response 1-like protein (LOC100775877), mRNA	transport inhibitor response 1-like protein(LOC100775877)	coding protein	psRNATarget
XM_006600927.1	ncRNA:22   CGCGCAGG---AGGGGCAGCAGCAG   1   *|*|||||---|||||||||||||| targets:311   CCCCGUCCCCGUCCCCGUCGUCGUC   335 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100777538 (LOC100777538), mRNA	uncharacterized LOC100777538(LOC100777538)	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).