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BaseInfo

ncRNA ID gma-miR167c
Species Glycine max
Class miRNA
Genome position chr7:39778512-39778886 [+]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - UGAAGCUGCCAGCAUGAUCUG - 31
Stem-loop(if miRNA) U     A            C  C          --         A   UUUU   --    ACCU  CA -  -C  AUUUUUAAGCACCAGUCAUUAGAGAAAAUAAUGGUGAAAAAUCCAUCUAUUCAAUUUUUUUUUUCAAAUUCAAGGUUUCCAGUAUGUAUCACUAAUGGUGAAAAAAGUGAUGGAAU
 UUGAG GGUUGAAGCUGC AG AUGAUCUGGU  AAAUCACAU CUU    UUU  UCUC    CU  U GC  UA                                                                                                                    U
 ||||| |||||||||||| || ||||||||||  ||||||||| |||    |||  ||||    ||  | ||  ||                                                                                                                    U
 AACUC CUAACUUCGACG UC UACUGGACUA  UUUGGUGUA GAA    CUA  GGUU    AC  G GA  AC                                                                                                                    U
U     A            U  -          CC         -   --UA   UU    --UA  -- G  AG  CACCCAAAGGAAAUUCAUAAUUAAGGUUAAAUAUUCAGAGAAAAUAAAGAACCGAGUCUUUGAACUUCUUUUACUUUUGAGUUUUUUUUUUUUUCAUUUAAAUUGGGUACAAGAUG
Stem-loop sequence UUUGAGAGGUUGAAGCUGCCAGCAUGAUCUGGUAAAUCACAUACUUUUUUUUUUCUCACCUCUCAUGCCUAAUUUUUAAGCACCAGUCAUUAGAGAAAAUAAUGGUGAAAAAUCCAUCUAUUCAAUUUUUUUUUUCAAAUUCAAGGUUUCCAGUAUGUAUCACUAAUGGUGAAAAAAGUGAUGGAAUUUUGUAGAACAUGGGUUAAAUUUACUUUUUUUUUUUUUGAGUUUUCAUUUUCUUCAAGUUUCUGAGCCAAGAAAUAAAAGAGACUUAUAAAUUGGAAUUAAUACUUAAAGGAAACCCACCAGAAGGGCAAUUUGGUUAUCAUAAGAUGUGGUUUCCAUCAGGUCAUCUUGCAGCUUCAAUCACUCAAU

Reference

1 PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots";
Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
BMC Genomics. 9:160(2008).