ncRNA ID | gma-miR167c |
Species | Glycine max |
Class | miRNA |
Genome position | chr7:39778512-39778886 [+] |
Reference genome | v1.0 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 11 - UGAAGCUGCCAGCAUGAUCUG - 31 |
Stem-loop(if miRNA) |
U     A            C  C          --         A   UUUU   --    ACCU  CA -  -C  AUUUUUAAGCACCAGUCAUUAGAGAAAAUAAUGGUGAAAAAUCCAUCUAUUCAAUUUUUUUUUUCAAAUUCAAGGUUUCCAGUAUGUAUCACUAAUGGUGAAAAAAGUGAUGGAAU  UUGAG GGUUGAAGCUGC AG AUGAUCUGGU  AAAUCACAU CUU    UUU  UCUC    CU  U GC  UA                                                                                                                    U  ||||| |||||||||||| || ||||||||||  ||||||||| |||    |||  ||||    ||  | ||  ||                                                                                                                    U  AACUC CUAACUUCGACG UC UACUGGACUA  UUUGGUGUA GAA    CUA  GGUU    AC  G GA  AC                                                                                                                    U U     A            U  -          CC         -   --UA   UU    --UA  -- G  AG  CACCCAAAGGAAAUUCAUAAUUAAGGUUAAAUAUUCAGAGAAAAUAAAGAACCGAGUCUUUGAACUUCUUUUACUUUUGAGUUUUUUUUUUUUUCAUUUAAAUUGGGUACAAGAUG |
Stem-loop sequence | UUUGAGAGGUUGAAGCUGCCAGCAUGAUCUGGUAAAUCACAUACUUUUUUUUUUCUCACCUCUCAUGCCUAAUUUUUAAGCACCAGUCAUUAGAGAAAAUAAUGGUGAAAAAUCCAUCUAUUCAAUUUUUUUUUUCAAAUUCAAGGUUUCCAGUAUGUAUCACUAAUGGUGAAAAAAGUGAUGGAAUUUUGUAGAACAUGGGUUAAAUUUACUUUUUUUUUUUUUGAGUUUUCAUUUUCUUCAAGUUUCUGAGCCAAGAAAUAAAAGAGACUUAUAAAUUGGAAUUAAUACUUAAAGGAAACCCACCAGAAGGGCAAUUUGGUUAUCAUAAGAUGUGGUUUCCAUCAGGUCAUCUUGCAGCUUCAAUCACUCAAU |
1 | PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008). |