ncRNA ID | ath-miR5027 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr5:10943902-10944062 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 22 - ACCGGUUGGAACUUGCCUUAA - 42 |
Stem-loop(if miRNA) |
--------     U  GA        AAAAC     G       C              G         ----A          GACA         UCAAU UA  UAUGUGAG     CGGUU GAACUUG CUUAACCAAGAAAA CUACAAAAU     UUUUUUUUCU    A         ||||| ||  ||||||||     ||||| ||||||| |||||||||||||| |||||||||     ||||||||||         GGUUG GU  GUACAUUU     GCCAA CUUGGAC GAAUUGGUUCUUUU GGUGUUUUA     AAGAAAAAGA    A AGUGUGUA     U  AC        ----A     A       C              -         GCUAA          AAAA |
Stem-loop sequence | UCAAUUUAGAUAUGUGAGAAAACCGGUUGGAACUUGCCUUAACCAAGAAAAGCUACAAAAUAUUUUUUUUCUGACAAAAAAAAGAAAAAGAAAAUCGAUUUUGUGGUUUUCUUGGUUAAGCCAGGUUCAAACCGAUUUACAUGCAUGUGUUGGAUGUGUGA |
1 | PMID:21357774
"MicroRNA activity in the Arabidopsis male germline"; Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD; J Exp Bot. 62:1611-1620(2011). |