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BaseInfo

ncRNA ID ath-miR5027
Species Arabidopsis thaliana
Class miRNA
Genome position chr5:10943902-10944062 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 22 - ACCGGUUGGAACUUGCCUUAA - 42
Stem-loop(if miRNA) --------     U  GA        AAAAC     G       C              G         ----A          GACA
        UCAAU UA  UAUGUGAG     CGGUU GAACUUG CUUAACCAAGAAAA CUACAAAAU     UUUUUUUUCU    A
        ||||| ||  ||||||||     ||||| ||||||| |||||||||||||| |||||||||     ||||||||||
        GGUUG GU  GUACAUUU     GCCAA CUUGGAC GAAUUGGUUCUUUU GGUGUUUUA     AAGAAAAAGA    A
AGUGUGUA     U  AC        ----A     A       C              -         GCUAA          AAAA
Stem-loop sequence UCAAUUUAGAUAUGUGAGAAAACCGGUUGGAACUUGCCUUAACCAAGAAAAGCUACAAAAUAUUUUUUUUCUGACAAAAAAAAGAAAAAGAAAAUCGAUUUUGUGGUUUUCUUGGUUAAGCCAGGUUCAAACCGAUUUACAUGCAUGUGUUGGAUGUGUGA

Reference

1 PMID:21357774
"MicroRNA activity in the Arabidopsis male germline";
Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD;
J Exp Bot. 62:1611-1620(2011).