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BaseInfo

ncRNA ID	gma-miR1519
Species	Glycine max
Class	miRNA
Genome position	chr7:13906902-13907168 [-]
Reference genome	v1.0
Source	miRBase
Length	22
Mature sequence(if miRNA)	236 - UAAGUGUUGCAAAAUAGUCAUU - 257
Stem-loop(if miRNA)	U      -A                     AUUC   UAAAU   AAAGUAACACCGUUAGUGAGAUCAAUUUUAGUGCCACGUGAACUAUCCAAUAUAGCACUAAAGGAUGACGUGACAUGACAUGUGGACGUGUCU  AUCUUU  CAUAAGUGUUGCAAAAUAGUC    CGU     UUU                                                                                             C  ||||||  |||||||||||||||||||||    |||     |||  UAGAAA  GUAUUCAUAACGUUUUAUCAG    AGA     UUG                                                                                             C -      AC                     ----   -----   AAUUUUCUACAGUCUUUAGCACGAAUUUCACAGGUACGUAACGUUUCCAACACUUUACAGAGCACCUGAAAGUUUUACUGCACUGUAGAAAAU
Stem-loop sequence	UAUCUUUACAUAAGUGUUGCAAAAUAGUCAUUCCGUUAAAUUUUAAAGUAACACCGUUAGUGAGAUCAAUUUUAGUGCCACGUGAACUAUCCAAUAUAGCACUAAAGGAUGACGUGACAUGACAUGUGGACGUGUCUCCUAAAAGAUGUCACGUCAUUUUGAAAGUCCACGAGACAUUUCACAACCUUUGCAAUGCAUGGACACUUUAAGCACGAUUUCUGACAUCUUUUAAGUUAGAGACUAUUUUGCAAUACUUAUGCAAAAGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014771122.1	ncRNA:22   UUACUGAUAAAACGUUGUGAAU   1   ||-|||*||||||||||||||| targets:1360   AA-GACAAUUUUGCAACACUUA   1380 Target Full Sequence	1.0	PREDICTED: Glycine max cyclin-D4-1-like (LOC100799683), transcript variant X2, mRNA	cyclin-D4-1-like(LOC100799683)	coding protein	psRNATarget
XM_006602163.2	ncRNA:22   UUACUGAUAAAACGUUGUGAAU   1   ||-|||*||||||||||||||| targets:1453   AA-GACAAUUUUGCAACACUUA   1473 Target Full Sequence	1.0	PREDICTED: Glycine max cyclin-D4-1-like (LOC100799683), transcript variant X1, mRNA	cyclin-D4-1-like(LOC100799683)	coding protein	psRNATarget
XM_014769769.1	ncRNA:22   UUACUGAUAAAACGUUGUGAAU   1   |=*|||||||||||||*||||| targets:5241   AGAGACUAUUUUGCAAAACUUA   5262 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102668781 (LOC102668781), transcript variant X1, mRNA	uncharacterized LOC102668781(LOC102668781)	coding protein	psRNATarget
XM_014775603.1	ncRNA:22   UUACUGAUAAAACGUUGUGAAU   1   ==*||=||||||||||=||||| targets:2920   GGGGAUUAUUUUGCAAUACUUA   2941 Target Full Sequence	2.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like (LOC102668682), mRNA	pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like(LOC102668682)	coding protein	psRNATarget

Reference

1	PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008).