ncRNA ID | gma-miR159e-5p |
Species | Glycine max |
Class | miRNA |
Genome position | chr7:9524917-9525127 [-] |
Reference genome | v1.0 |
Source | miRBase |
Length | 20 |
Mature sequence(if miRNA) | 173 - GAGCUCCUUGAAGUCCAAUU - 192 |
Stem-loop(if miRNA) |
-         -UUAU  A            GA       UU      CU    ----   UG   U     G     C      UC      UU     -  UCAUUA  CAAAGGGGG     GG GUGGAGCUCCUU  AGUCCAA  GAGGAU  UACU    GGG  GAU GAGCU CUUAG UAUGGA  CCACAG  CUACC CA      A  |||||||||     || ||||||||||||  |||||||  ||||||  ||||    |||  ||| ||||| ||||| ||||||  ||||||  ||||| ||  GUUUUCCCC     CC CAUCUCGAGGGA  UUAGGUU  UUCCUA  AUGA    UCC  UUA UUCGA GGGUC AUACCU  GGUGUU  GAUGG GU      G U         UCUUC  A            AG       UC      UU    UAUU   GU   C     G     U      UC      CU     U  UUUCGU |
Stem-loop sequence | CAAAGGGGGUUAUGGAGUGGAGCUCCUUGAAGUCCAAUUGAGGAUCUUACUGGGUGGAUUGAGCUGCUUAGCUAUGGAUCCCACAGUUCUACCCAUCAUUAAGUGCUUUUGUGGUAGUCUUGUGGCUUCCAUAUCUGGGGAGCUUCAUUUGCCUUUAUAGUAUUAUCCUUCUUUGGAUUGAAGGGAGCUCUACACCCUUCUCCCCUUUUGU |
1 | PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011). |