ncRNA ID | ath-miR164c-3p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr5:9852674-9852775 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 74 - CACGUGUUCUACUACUCCAAC - 94 |
Stem-loop(if miRNA) |
UA    U  A     A  C              ---CA AAAUGAAAUCGA   ACAC UG UGGAG AG AGGGCACGUGCGAA     C            U   |||| || ||||| || ||||||||||||||     |            C   UGUG AC ACCUC UC UCUUGUGCACGCUU     C            G UC    C  A     A  A              UUAUA UAGUUGUUCAUG |
Stem-loop sequence | UAACACUUGAUGGAGAAGCAGGGCACGUGCGAACACAAAUGAAAUCGAUCGGUACUUGUUGAUCAUAUUUUCGCACGUGUUCUACUACUCCAACACGUGUCU |
1 | PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004). |
2 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
3 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |