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BaseInfo

ncRNA ID ath-miR164c-3p
Species Arabidopsis thaliana
Class miRNA
Genome position chr5:9852674-9852775 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 74 - CACGUGUUCUACUACUCCAAC - 94
Stem-loop(if miRNA) UA    U  A     A  C              ---CA AAAUGAAAUCGA
  ACAC UG UGGAG AG AGGGCACGUGCGAA     C            U
  |||| || ||||| || ||||||||||||||     |            C
  UGUG AC ACCUC UC UCUUGUGCACGCUU     C            G
UC    C  A     A  A              UUAUA UAGUUGUUCAUG
Stem-loop sequence UAACACUUGAUGGAGAAGCAGGGCACGUGCGAACACAAAUGAAAUCGAUCGGUACUUGUUGAUCAUAUUUUCGCACGUGUUCUACUACUCCAACACGUGUCU

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
3 PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis";
Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
J Exp Bot. 61:165-177(2010).