ncRNA ID | gma-miR159b-5p |
Species | Glycine max |
Class | miRNA |
Genome position | chr7:5386107-5386292 [-] |
Reference genome | v1.0 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 154 - GAGUUCCCUGCACUCCAAGUC - 174 |
Stem-loop(if miRNA) |
--AA    AAC            G        GU UG     A  UGAU       C  UA  G    UU    G U   UC       UU   AA     ACCC   UUGGAGUUCCCU CACUCCAA  C  AAAGG UA    GGUAAAC UC  CU CUAG  CAUG A ACC  UGACUUC  AAC  C     ||||   |||||||||||| ||||||||  |  ||||| ||    ||||||| ||  || ||||  |||| | |||  |||||||  |||  A     UGGG   GACCUCGAGGGA GUGAGGUU  G  UUUCU GU    CCAUUUG AG  GA GGUC  GUAC U UGG  ACUGAAG  UUG  U CUUA    --A            A        AU GU     A  ---U       -  UA  G    CC    G U   GA       -C   CG |
Stem-loop sequence | AAACCCAACUUGGAGUUCCCUGCACUCCAAGUCUGAAAGGAUAUGAUGGUAAACCUCUACUGCUAGUUCAUGGAUACCUCUGACUUCUUAACAACAUGCGUUCGAAGUCAAGGGUUUGCAUGCCCUGGGAGAUGAGUUUACCUUGAUCUUUUGGUAUUGGAGUGAAGGGAGCUCCAGAGGGUAUUC |
1 | PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008). |
2 | PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011). |