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BaseInfo

ncRNA ID gma-miR159b-5p
Species Glycine max
Class miRNA
Genome position chr7:5386107-5386292 [-]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 154 - GAGUUCCCUGCACUCCAAGUC - 174
Stem-loop(if miRNA) --AA    AAC            G        GU UG     A  UGAU       C  UA  G    UU    G U   UC       UU   AA
    ACCC   UUGGAGUUCCCU CACUCCAA  C  AAAGG UA    GGUAAAC UC  CU CUAG  CAUG A ACC  UGACUUC  AAC  C
    ||||   |||||||||||| ||||||||  |  ||||| ||    ||||||| ||  || ||||  |||| | |||  |||||||  |||  A
    UGGG   GACCUCGAGGGA GUGAGGUU  G  UUUCU GU    CCAUUUG AG  GA GGUC  GUAC U UGG  ACUGAAG  UUG  U
CUUA    --A            A        AU GU     A  ---U       -  UA  G    CC    G U   GA       -C   CG
Stem-loop sequence AAACCCAACUUGGAGUUCCCUGCACUCCAAGUCUGAAAGGAUAUGAUGGUAAACCUCUACUGCUAGUUCAUGGAUACCUCUGACUUCUUAACAACAUGCGUUCGAAGUCAAGGGUUUGCAUGCCCUGGGAGAUGAGUUUACCUUGAUCUUUUGGUAUUGGAGUGAAGGGAGCUCCAGAGGGUAUUC

Reference

1 PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots";
Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
BMC Genomics. 9:160(2008).
2 PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses";
Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R;
BMC Genomics. 12:307(2011).