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BaseInfo

ncRNA ID	gma-miR5667-5p
Species	Glycine max
Class	miRNA
Genome position	chr7:5340343-5340430 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	55 - AAUCCAUUCAGAUCUGUUUCG - 75
Stem-loop(if miRNA)	G UG    A            C            ---C   A  A  U  GAAC GAGGAAUCCAUU AGAUCUGUUUCG    AAC CC U  |  |||| |||||||||||| ||||||||||||    ||| || A  A  CUUG UUCCUUAGGUAA UCUAGACAAAGU    UUG GG U - GU    A            A            CAGC   -  U
Stem-loop sequence	GUUGGAACAGAGGAAUCCAUUCAGAUCUGUUUCGCAACACCAUAUUGGGUUCGACUGAAACAGAUCUAAAUGGAUUCCUUAGUUCUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI410511.1	ncRNA:21   GCUUUGUCUAGACUUACCUAA   1   =|||||||||||*|||||||| targets:50   UGAAACAGAUCUAAAUGGAUU   70 Target Full Sequence	1.5	Sequence 8636 from Patent EP2074227	NA	coding protein	psRNATarget
JB170972.1	ncRNA:21   GCUUUGUCUAGACUUACCUAA   1   =|||||||||||*|||||||| targets:50   UGAAACAGAUCUAAAUGGAUU   70 Target Full Sequence	1.5	Sequence 8636 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242641.1	ncRNA:21   GCUUUGUCUAGACUUACCUAA   1   =|||||||||||*|||||||| targets:50   UGAAACAGAUCUAAAUGGAUU   70 Target Full Sequence	1.5	Sequence 8636 from Patent EP2985353	NA	coding protein	psRNATarget
XM_003544048.3	ncRNA:21   GCUUU--GUCUAGACUUACCUAA   1   =||||--|||||||||||||||| targets:1643   UGAAAUACAGAUCUGAAUGGAUU   1665 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized WD repeat-containing protein C17D11.16-like (LOC100807947), mRNA	uncharacterized WD repeat-containing protein C17D11.16-like(LOC100807947)	coding protein	psRNATarget

Reference

1	PMID:21219599 "Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing"; Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS; BMC Plant Biol. 11:5(2011).
2	PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).
3	PMID:24475082 "Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons"; Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ; PLoS One. 9:e86153(2014).