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BaseInfo

ncRNA ID	gma-miR5035-5p
Species	Glycine max
Class	miRNA
Genome position	chr7:1939800-1939950 [+]
Reference genome	v1.0
Source	miRBase
Length	22
Mature sequence(if miRNA)	61 - CUUCUAAACAUUUUUUCCCUUA - 82
Stem-loop(if miRNA)	A    CU    CUUGUCUACUGAAAAUCAUAUAAACAUAUGUACCUACCUAUCCUAUGAGCUUCUAAACAUUUUUU  UCAG  UAGG                                                                 C  ||||  ||||  UAUA  CAUG                                                                 C -    --    GAUAGAUAAGAUACUCGAAGAUUUGUAAAAAAGGGAGUACGGUUUCUACAAAAGAAACCGUAUUC
Stem-loop sequence	AUCAGCUUAGGCUUGUCUACUGAAAAUCAUAUAAACAUAUGUACCUACCUAUCCUAUGAGCUUCUAAACAUUUUUUCCCUUAUGCCAAAGAAAACAUCUUUGGCAUGAGGGAAAAAAUGUUUAGAAGCUCAUAGAAUAGAUAGGUACAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003549107.3	ncRNA:22   AUUCCCUUUUUUACAAAUCUUC   1   **=||||||||||||||||||| targets:1687   GUGGGGAAAAAAUGUUUAGAAG   1708 Target Full Sequence	0.0	PREDICTED: Glycine max putative clathrin assembly protein At1g33340 (LOC100808531), mRNA	putative clathrin assembly protein At1g33340(LOC100808531)	coding protein	psRNATarget
XM_003533215.3	ncRNA:22   AUUCCCUUUUUUACAAAUCUUC   1   |==|||*||||||||||||||| targets:1688   UGGGGGCAAAAAUGUUUAGAAG   1709 Target Full Sequence	1.0	PREDICTED: Glycine max putative clathrin assembly protein At1g33340 (LOC100819393), mRNA	putative clathrin assembly protein At1g33340(LOC100819393)	coding protein	psRNATarget
XM_006599213.2	ncRNA:22   AUUCCCUUUUUUACAAAUCUUC   1   *|*||||=||||*||||||||| targets:1579   CACGGGAGAAAAGGUUUAGAAG   1600 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100810825 (LOC100810825), mRNA	uncharacterized LOC100810825(LOC100810825)	coding protein	psRNATarget
AK245323.1	ncRNA:22   AUUCCCUUUUUUACAAAUCUUC   1   *||*|*|=|||||||||||||| targets:2781   AAACGCAGAAAAUGUUUAGAAG   2802 Target Full Sequence	3.0	Glycine max cDNA, clone: GMFL01-26-P11	NA	coding protein	psRNATarget

Reference

1	PMID:21751852 "Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome"; Radwan O, Liu Y, Clough SJ; Mol Plant Microbe Interact. 24:958-972(2011).
2	PMID:24475082 "Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons"; Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ; PLoS One. 9:e86153(2014).