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BaseInfo

ncRNA ID	gma-miR1520d
Species	Glycine max
Class	miRNA
Genome position	chr7:119451-119561 [-]
Reference genome	v1.0
Source	miRBase
Length	22
Mature sequence(if miRNA)	11 - AUCAGAACAUGACACGUGACAA - 32
Stem-loop(if miRNA)	---       C A    A                 AUGUUAAC  U       -     A    AUGAUGA U UCAC UGUCAUGUUCUGAUUGG        UC AUGAAAA AACAA U    ||||||| | |||| |||||||||||||||||        || ||||||| ||||| A    UACUAUU A AGUG ACAGUACAAGACUAACU        AG UACUUUU UUGUU C ACC       A C    C                 --------  U       G     A
Stem-loop sequence	AUGAUGACUAUCACAUGUCAUGUUCUGAUUGGAUGUUAACUCUAUGAAAAAACAAAUACAUUGUUGUUUUCAUUGAUCAAUCAGAACAUGACACGUGACAAUUAUCAUCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ242574.1	ncRNA:22   AACAGUGCACAGUACAAGACUA   1   *||||||||||||||||||*|| targets:17   CUGUCACGUGUCAUGUUCUAAU   38 Target Full Sequence	1.5	Sequence 8569 from Patent EP2985353	NA	coding protein	psRNATarget
HI410444.1	ncRNA:22   AACAGUGCACAGUACAAGACUA   1   *||||||||||||||||||*|| targets:17   CUGUCACGUGUCAUGUUCUAAU   38 Target Full Sequence	1.5	Sequence 8569 from Patent EP2074227	NA	coding protein	psRNATarget
JB170905.1	ncRNA:22   AACAGUGCACAGUACAAGACUA   1   *||||||||||||||||||*|| targets:17   CUGUCACGUGUCAUGUUCUAAU   38 Target Full Sequence	1.5	Sequence 8569 from Patent EP2559767	NA	coding protein	psRNATarget
JB170906.1	ncRNA:22   AACAGUGCACAGUACAAGACUA   1   *||||||||||||||||||*|| targets:78   CUGUCACGUGUCAUGUUCUAAU   99 Target Full Sequence	1.5	Sequence 8570 from Patent EP2559767	NA	coding protein	psRNATarget
HI410445.1	ncRNA:22   AACAGUGCACAGUACAAGACUA   1   *||||||||||||||||||*|| targets:78   CUGUCACGUGUCAUGUUCUAAU   99 Target Full Sequence	1.5	Sequence 8570 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242575.1	ncRNA:22   AACAGUGCACAGUACAAGACUA   1   *||||||||||||||||||*|| targets:78   CUGUCACGUGUCAUGUUCUAAU   99 Target Full Sequence	1.5	Sequence 8570 from Patent EP2985353	NA	coding protein	psRNATarget
XM_003518407.3	ncRNA:22   AACAGUGCACAGUACAAGACUA   1   *||||||||||||*|||||||| targets:1636   CUGUCACGUGUCACGUUCUGAU   1657 Target Full Sequence	1.5	PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100803577), mRNA	UPF0481 protein At3g47200-like(LOC100803577)	coding protein	psRNATarget
HI410475.1	ncRNA:22   AACAGUGCACAGUACAAGACUA   1   ||-||||||||||||||=|||| targets:108   UU-UCACGUGUCAUGUUUUGAU   128 Target Full Sequence	1.5	Sequence 8600 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242605.1	ncRNA:22   AACAGUGCACAGUACAAGACUA   1   ||-||||||||||||||=|||| targets:108   UU-UCACGUGUCAUGUUUUGAU   128 Target Full Sequence	1.5	Sequence 8600 from Patent EP2985353	NA	coding protein	psRNATarget
JB170936.1	ncRNA:22   AACAGUGCACAGUACAAGACUA   1   ||-||||||||||||||=|||| targets:108   UU-UCACGUGUCAUGUUUUGAU   128 Target Full Sequence	1.5	Sequence 8600 from Patent EP2559767	NA	coding protein	psRNATarget
XM_006573624.2	ncRNA:22   AACAGUGCACAGUACAAGACUA   1   ||-||||||||||||||=|||| targets:1517   UU-UCACGUGUCAUGUUUUGAU   1537 Target Full Sequence	1.5	PREDICTED: Glycine max transcription factor bHLH18-like (LOC100816551), transcript variant X2, mRNA	transcription factor bHLH18-like(LOC100816551)	coding protein	psRNATarget
XM_006573623.2	ncRNA:22   AACAGUGCACAGUACAAGACUA   1   ||-||||||||||||||=|||| targets:1529   UU-UCACGUGUCAUGUUUUGAU   1549 Target Full Sequence	1.5	PREDICTED: Glycine max transcription factor bHLH18-like (LOC100816551), transcript variant X1, mRNA	transcription factor bHLH18-like(LOC100816551)	coding protein	psRNATarget

Reference

1	PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008).