Search result

BaseInfo

ncRNA ID	gma-miR171i-3p
Species	Glycine max
Class	miRNA
Genome position	chr6:48920612-48920762 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	20 - UUGAGCCGUGCCAAUAUCACG - 40
Stem-loop(if miRNA)	UUAAAGGCAAGCUU    -   AU       AGAGGGGA   GUUCAACGGGAUAUUGGUCCGGUUCAAUAAGAAAGCAAUGC               GGUG GAA  GAGAGGU        CCG                                         U               |||| |||  |||||||        |||                                         C               CCAU CUU  CUCUUCA        CUA                                         A --------------    A   --       -CAAAGCA   UAACCGUGCCGAGUUACUUUUUUGUCCUGGGUUAUUGUAAA
Stem-loop sequence	UUAAAGGCAAGCUUGGUGGAAAUGAGAGGUAGAGGGGACCGGUUCAACGGGAUAUUGGUCCGGUUCAAUAAGAAAGCAAUGCUCAAAAUGUUAUUGGGUCCUGUUUUUUCAUUGAGCCGUGCCAAUAUCACGAAACACUUCUCUUCAUACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014773107.1	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   ||*|||||||||=|||||||| targets:1513   CGGGAUAUUGGCGCGGCUCAA   1533 Target Full Sequence	2.5	PREDICTED: Glycine max scarecrow-like protein 6 (LOC100805945), mRNA	scarecrow-like protein 6(LOC100805945)	coding protein	psRNATarget
XM_006573169.2	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   =|*|||||||||=|||||||| targets:1751   UGGGAUAUUGGCGCGGCUCAA   1771 Target Full Sequence	2.5	PREDICTED: Glycine max scarecrow-like protein 27 (LOC100792973), mRNA	scarecrow-like protein 27(LOC100792973)	coding protein	psRNATarget
XM_006576371.2	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:1630   AGGGAUAUUGGCGCGGCUCAA   1650 Target Full Sequence	2.5	PREDICTED: Glycine max scarecrow-like protein 6 (LOC100794596), mRNA	scarecrow-like protein 6(LOC100794596)	coding protein	psRNATarget
XM_003516392.3	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:1780   AGGGAUAUUGGCGCGGCUCAA   1800 Target Full Sequence	2.5	PREDICTED: Glycine max scarecrow-like protein 6 (LOC100801785), mRNA	scarecrow-like protein 6(LOC100801785)	coding protein	psRNATarget

Reference

1	PMID:21751852 "Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome"; Radwan O, Liu Y, Clough SJ; Mol Plant Microbe Interact. 24:958-972(2011).
2	PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).