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BaseInfo

ncRNA ID	gma-miR171i-5p
Species	Glycine max
Class	miRNA
Genome position	chr6:48920612-48920762 [-]
Reference genome	v1.0
Source	miRBase
Length	20
Mature sequence(if miRNA)	65 - AUAAGAAAGCAAUGCUCAAA - 84
Stem-loop(if miRNA)	UUAAAGGCAAGCUU    -   AU       AGAGGGGA   GUUCAACGGGAUAUUGGUCCGGUUCAAUAAGAAAGCAAUGC               GGUG GAA  GAGAGGU        CCG                                         U               |||| |||  |||||||        |||                                         C               CCAU CUU  CUCUUCA        CUA                                         A --------------    A   --       -CAAAGCA   UAACCGUGCCGAGUUACUUUUUUGUCCUGGGUUAUUGUAAA
Stem-loop sequence	UUAAAGGCAAGCUUGGUGGAAAUGAGAGGUAGAGGGGACCGGUUCAACGGGAUAUUGGUCCGGUUCAAUAAGAAAGCAAUGCUCAAAAUGUUAUUGGGUCCUGUUUUUUCAUUGAGCCGUGCCAAUAUCACGAAACACUUCUCUUCAUACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001251645.2	ncRNA:20   AAACUCGUAACGAAAGAAUA   1   |*|||||||||*|||||||| targets:358   UAUGAGCAUUGAUUUCUUAU   377 Target Full Sequence	2.5	Glycine max uncharacterized LOC100527348 (LOC100527348), mRNA	uncharacterized LOC100527348(LOC100527348)	coding protein	psRNATarget
BT092182.1	ncRNA:20   AAACUCGUAACGAAAGAAUA   1   |*|||||||||*|||||||| targets:360   UAUGAGCAUUGAUUUCUUAU   379 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-10E4 unknown mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:21751852 "Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome"; Radwan O, Liu Y, Clough SJ; Mol Plant Microbe Interact. 24:958-972(2011).
2	PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).