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BaseInfo

ncRNA ID gma-miR5778
Species Glycine max
Class miRNA
Genome position chr6:47266922-47267044 [+]
Reference genome v1.0
Source miRBase
Length 22
Mature sequence(if miRNA) 11 - CGACGAACUCUUCGUCGGCAUC - 32
Stem-loop(if miRNA) GCA   A         AC          CAUC              UGU          UUG
   UCA CUUCGACGA  UCUUCGUCGG    GACAUCCACGGAGA   CUUGCCGGAC   G
   ||| |||||||||  ||||||||||    ||||||||||||||   ||||||||||
   AGU GAGGCUGCU  AGGAGCGGCC    CUGUAGGUGCCUCU   GAGCGGCUUG   A
UCA   A         -A          ACGA              --U          UAG
Stem-loop sequence GCAUCAACUUCGACGAACUCUUCGUCGGCAUCGACAUCCACGGAGAUGUCUUGCCGGACUUGGAGAUGUUCGGCGAGUUCUCCGUGGAUGUCAGCACCGGCGAGGAAUCGUCGGAGAUGAACU

Reference

1 PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs";
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC;
Genes Dev. 25:2540-2553(2011).