| ncRNA ID | ath-miR5657 |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr5:9789582-9789666 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 61 - UGGACAAGGUUAGAUUUGGUG - 81 |
| Stem-loop(if miRNA) |
--- AAUA G U ----U AA GA CC CCA CGAGUC AAC CUUGUCC G GUGUA GG U ||| |||||| ||| ||||||| | ||||| || GGU GUUUAG UUG GAACAGG C CACAU CC A AAA ---G A - UCAAC AA GA AA |
| Stem-loop sequence | CCAAAUACGAGUCGAACUCUUGUCCUGAAGUGUAGAGGCCUAAACCAGUACACAACCAACUGGACAAGGUUAGAUUUGGUGGAAA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_001344026.1 |
|
0.0 | Arabidopsis thaliana Trypsin family protein with PDZ domain-containing protein (DEG14), mRNA | Trypsin family protein with PDZ domain-containing protein(DEG14) | coding protein | psRNATarget | |||||||||
| AK229323.1 |
|
0.0 | Arabidopsis thaliana mRNA for putative jasmonate inducible protein, complete cds, clone: RAFL16-58-D03 | NA | coding protein | psRNATarget | |||||||||
| AY772644.1 |
|
3.0 | Arabidopsis thaliana voucher CS902 SRK (SRK) pseudogene mRNA, complete sequence | NA | coding protein | psRNATarget |
| 1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |