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BaseInfo

ncRNA ID	gma-miR5781
Species	Glycine max
Class	miRNA
Genome position	chr6:35859204-35859285 [-]
Reference genome	v1.0
Source	miRBase
Length	22
Mature sequence(if miRNA)	11 - CUGAAACUGAGACUGCAUCUGG - 32
Stem-loop(if miRNA)	CCAA     GGC     AG     G G    CUUG GA    A     CUUCA   UCAGG  GCAGU U AGUU    U  UUGC U     |||||   |||||  ||||| | ||||    |  ||||     GAAGU   GGUCU  CGUCA A UCAA    G  AGCG C AUAG     --A     -A     G G    ---A UC    U
Stem-loop sequence	CCAACUUCAGGCUCAGGAGGCAGUGUGAGUUCUUGUGAUUGCAUCUGCGACUGAAACUGAGACUGCAUCUGGAUGAAGGAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014770986.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   |||||||||||||||||||||| targets:1387   CCAGAUGCAGUCUCAGUUUCAG   1408 Target Full Sequence	0.0	PREDICTED: Glycine max uncharacterized LOC106797154 (LOC106797154), transcript variant X2, mRNA	uncharacterized LOC106797154(LOC106797154)	coding protein	psRNATarget
XM_014770985.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   |||||||||||||||||||||| targets:1482   CCAGAUGCAGUCUCAGUUUCAG   1503 Target Full Sequence	0.0	PREDICTED: Glycine max uncharacterized LOC106797154 (LOC106797154), transcript variant X1, mRNA	uncharacterized LOC106797154(LOC106797154)	coding protein	psRNATarget
XM_014767652.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   ||||||||||||*||||||||| targets:72   CCAGAUGCAGUCCCAGUUUCAG   93 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC106796100 (LOC106796100), mRNA	uncharacterized LOC106796100(LOC106796100)	coding protein	psRNATarget
XM_014770570.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   ||||||||||||*||||||||| targets:685   CCAGAUGCAGUCGCAGUUUCAG   706 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC106796922 (LOC106796922), mRNA	uncharacterized LOC106796922(LOC106796922)	coding protein	psRNATarget
XM_014762725.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   ||||||||||||*||||||||| targets:829   CCAGAUGCAGUCGCAGUUUCAG   850 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC106794836 (LOC106794836), mRNA	uncharacterized LOC106794836(LOC106794836)	coding protein	psRNATarget
XM_006593125.2	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   ||||||||||||*||||||||| targets:1382   CCAGAUGCAGUCCCAGUUUCAG   1403 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102661906 (LOC102661906), mRNA	uncharacterized LOC102661906(LOC102661906)	coding protein	psRNATarget
XM_014773195.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   ||||||||||||*||||||||| targets:1697   CCAGAUGCAGUCCCAGUUUCAG   1718 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102660284 (LOC102660284), mRNA	uncharacterized LOC102660284(LOC102660284)	coding protein	psRNATarget
XM_014773484.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   ||||||||||||*||||||||| targets:1641   CCAGAUGCAGUCCCAGUUUCAG   1662 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102662694 (LOC102662694), transcript variant X2, mRNA	uncharacterized LOC102662694(LOC102662694)	coding protein	psRNATarget
XM_014779275.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   ||||||||||||*||||||||| targets:1201   CCAGAUGCAGUCCCAGUUUCAG   1222 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X7, mRNA	uncharacterized LOC100792767(LOC100792767)	coding protein	psRNATarget
XM_014773485.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   ||||||||||||*||||||||| targets:1730   CCAGAUGCAGUCCCAGUUUCAG   1751 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102662694 (LOC102662694), transcript variant X3, mRNA	uncharacterized LOC102662694(LOC102662694)	coding protein	psRNATarget
XM_014779274.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   ||||||||||||*||||||||| targets:1201   CCAGAUGCAGUCCCAGUUUCAG   1222 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X6, mRNA	uncharacterized LOC100792767(LOC100792767)	coding protein	psRNATarget
XM_014773483.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   ||||||||||||*||||||||| targets:2137   CCAGAUGCAGUCCCAGUUUCAG   2158 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102662694 (LOC102662694), transcript variant X1, mRNA	uncharacterized LOC102662694(LOC102662694)	coding protein	psRNATarget
XM_014779273.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   ||||||||||||*||||||||| targets:1154   CCAGAUGCAGUCCCAGUUUCAG   1175 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X5, mRNA	uncharacterized LOC100792767(LOC100792767)	coding protein	psRNATarget
XM_014779270.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   ||||||||||||*||||||||| targets:1201   CCAGAUGCAGUCCCAGUUUCAG   1222 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X2, mRNA	uncharacterized LOC100792767(LOC100792767)	coding protein	psRNATarget
XM_014779271.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   ||||||||||||*||||||||| targets:1322   CCAGAUGCAGUCCCAGUUUCAG   1343 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X3, mRNA	uncharacterized LOC100792767(LOC100792767)	coding protein	psRNATarget
XM_014779272.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   ||||||||||||*||||||||| targets:2344   CCAGAUGCAGUCCCAGUUUCAG   2365 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X4, mRNA	uncharacterized LOC100792767(LOC100792767)	coding protein	psRNATarget
XM_014770450.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   |||||||=||||*||||||||| targets:100   CCAGAUGUAGUCACAGUUUCAG   121 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106796841 (LOC106796841), mRNA	uncharacterized LOC106796841(LOC106796841)	coding protein	psRNATarget
XM_014778023.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   |=|||||=||||*||||||||| targets:332   CUAGAUGUAGUCCCAGUUUCAG   353 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106799462 (LOC106799462), mRNA	uncharacterized LOC106799462(LOC106799462)	coding protein	psRNATarget
XM_014761650.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   ||||||*|||||*||||||||| targets:2116   CCAGAUACAGUCCCAGUUUCAG   2137 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106794384 (LOC106794384), mRNA	uncharacterized LOC106794384(LOC106794384)	coding protein	psRNATarget
NM_001249544.2	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   =|*|||||*||=|||||||||| targets:862   UCUGAUGCUGUUUCAGUUUCAG   883 Target Full Sequence	2.5	Glycine max MYB transcription factor MYB150 (MYB150), mRNA	MYB transcription factor MYB150(MYB150)	coding protein	psRNATarget
XM_003522951.3	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   =|*|||||*||=|||||||||| targets:1358   UCUGAUGCUGUUUCAGUUUCAG   1379 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100793553 (LOC100793553), mRNA	uncharacterized LOC100793553(LOC100793553)	coding protein	psRNATarget
XM_006604289.2	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   **||||||||||*||||||||* targets:1246   AGAGAUGCAGUCACAGUUUCAA   1267 Target Full Sequence	2.5	PREDICTED: Glycine max kinesin-4-like (LOC100786642), mRNA	kinesin-4-like(LOC100786642)	coding protein	psRNATarget
NM_001250647.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   =|||***||||||||||||||| targets:67   UCAGUCUCAGUCUCAGUUUCAG   88 Target Full Sequence	3.0	Glycine max uncharacterized LOC100500151 (LOC100500151), mRNA	uncharacterized LOC100500151(LOC100500151)	coding protein	psRNATarget
BT091003.1	ncRNA:22   GGUCUACGUCAGAGUCAAAGUC   1   =|||***||||||||||||||| targets:67   UCAGUCUCAGUCUCAGUUUCAG   88 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-6C17 unknown mRNA	NA	coding protein	psRNATarget
AK287204.1	ncRNA:21   GUCUACGUCAGAGUCAAAGUC   1   *||=**||||||||||||||| targets:1   GAGGCUCAGUCUCAGUUUCAG   21 Target Full Sequence	3.0	Glycine max cDNA, clone: GMFL01-46-I15	NA	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).