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BaseInfo

ncRNA ID gma-miR5780a
Species Glycine max
Class miRNA
Genome position chr6:28710128-28710255 [-]
Reference genome v1.0
Source miRBase
Length 23
Mature sequence(if miRNA) 11 - AUCACUUAGCUGACGGUAGGGAC - 33
Stem-loop(if miRNA) U    GU                 A            CA           -    A  GAUAUA
 UUUG  CUGGGUUCCUAUUGUCA GUUAAGUGAUGA  UGACAUCAUCU GAUG CU      U
 ||||  ||||||||||||||||| ||||||||||||  ||||||||||| |||| ||      A
 AAAC  GAUCCAGGGAUGGCAGU CGAUUCACUACU  ACUGUAGUAGA UUGC GA      U
-    AG                 -            AC           G    C  GAAGGU
Stem-loop sequence UUUUGGUCUGGGUUCCUAUUGUCAAGUUAAGUGAUGACAUGACAUCAUCUGAUGACUGAUAUAUAUUGGAAGAGCCGUUGAGAUGAUGUCACAUCAUCACUUAGCUGACGGUAGGGACCUAGGACAAA

Reference

1 PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs";
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC;
Genes Dev. 25:2540-2553(2011).