| ncRNA ID | gma-miR162a |
| Species | Glycine max |
| Class | miRNA |
| Genome position | chr6:20176238-20176339 [-] |
| Reference genome | v1.0 |
| Source | miRBase |
| Length | 20 |
| Mature sequence(if miRNA) | 11 - UCGAUAAACCUCUGCAUCCA - 30 |
| Stem-loop(if miRNA) |
-- A U A C C UC C AA -GU U GUGA G C CUGGAUGCAG GGUU AUCGAUC UUC UG UC UG U |||| | | |||||||||| |||| ||||||| ||| || || || U CACU C G GACCUACGUC CCAA UAGCUAG AAG AC AG AC A CU - - C U A CU U CA ACU A |
| Stem-loop sequence | GUGAAGUCACUGGAUGCAGCGGUUCAUCGAUCUCUUCCUGAAUCGUUGUUUAACAUCAGAACCAUGAAUCGAUCGAUAAACCUCUGCAUCCAGCGCUCACUC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_006577296.2 |
|
3.0 | PREDICTED: Glycine max endoribonuclease Dicer homolog 1-like (LOC100780953), mRNA | endoribonuclease Dicer homolog 1-like(LOC100780953) | coding protein | psRNATarget | |||||||||
| XM_006604859.1 |
|
3.0 | PREDICTED: Glycine max endoribonuclease Dicer homolog 1-like (LOC100811631), mRNA | endoribonuclease Dicer homolog 1-like(LOC100811631) | coding protein | psRNATarget |
| 1 | PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008). |
| 2 | PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011). |