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BaseInfo

ncRNA ID gma-miR9750
Species Glycine max
Class miRNA
Genome position chr6:14453332-14453494 [-]
Reference genome v1.0
Source miRBase
Length 22
Mature sequence(if miRNA) 6 - UGUAAGUCCAUAUGUGCUCUCU - 27
Stem-loop(if miRNA) C    C    -                G          UAUUU  UCC          ---AAA   CUGGAUCGAGGAAGCAG
 AUUU AGAG GCGCGUAUGGACUUAC ACCUGAAGAU     CU   UGAUGAAGCU      GAU                 A
 |||| |||| |||||||||||||||| ||||||||||     ||   ||||||||||      |||                 A
 UAAA UCUC CGUGUAUACCUGAAUG UGGACUUCUA     GA   ACUACUUCGA      CUC                 G
-    A    U                -          -UUAC  -CC          GAACUU   CUCGUCAAUAUGGUACG
Stem-loop sequence CAUUUCAGAGGCGCGUAUGGACUUACGACCUGAAGAUUAUUUCUUCCUGAUGAAGCUAAAGAUCUGGAUCGAGGAAGCAGAAGGCAUGGUAUAACUGCUCCUCUUCAAGAGCUUCAUCACCAGCAUUAUCUUCAGGUGUAAGUCCAUAUGUGCUCUCUAAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003550815.3
ncRNA:22   UCUCUCGUGUAUACCUGAAUGU   1
  |||||*||||||*|||||||||
targets:340   AGAGAUCACAUACGGACUUACA   361

2.5 PREDICTED: Glycine max scarecrow-like protein 21 (LOC100813548), mRNA scarecrow-like protein 21(LOC100813548) coding protein psRNATarget
XM_003525617.3
ncRNA:22   UCUCUCGUGUAUACCUGAAUGU   1
  |||||*||||||*|||||||||
targets:527   AGAGAUCACAUACGGACUUACA   548

2.5 PREDICTED: Glycine max scarecrow-like protein 21 (LOC100815959), mRNA scarecrow-like protein 21(LOC100815959) coding protein psRNATarget

Reference

1 PMID:24475082
"Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons";
Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ;
PLoS One. 9:e86153(2014).